Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0338 ATGAATCTCAGCCACGGCAAGGGATCCACTTCGAGTTCTCCTCTGAAAGCAGGAGACACCGTCTCCGACCAGTTCCCGGCGGGTCTCCGGGTACTGGTTGTGGATGATGACCCCACTTGCCTTATGATCCTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACGAAATGCAAGCGAGCGGAGGTTGCATTGTCGCTTCTGAGAGAGAACAAAAATGGGTTTGATATCGTTTTAAGTGATGTGCATATGCCAGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCTGATGATGGAAAACAAGTTGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTGATTAAACCTGTTCGGATTGAGGCTTTGAAGAATATATGGCAGCATGTGGTTCGGATGAGAAAGAATGGTTTGAGAGATGTGGAGCAATCTGGTAGCATGGAAGAAGGAGATCGGCCTCCAAAGGGATCAGATGACGGAAATTACTCGTCTTCGGTGAATGAAGCCAAAAGCTCAAAGAAGAGGAGGGATGAGGACGAGGAAGGAGATGAGAGGGATGATTCCTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGTTGTGAATCAACTTGGAATTGATAAGGCTGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTTACTAGAGAAAATGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAGCAACTCCTTCATGAGCTCACAAGAAGCAACATTTGGGGGAACCTCAATCAATGGAATTGATCTTCAAACCCTTTCAGCTGCTGGCCAGTTCCCATCACAAAGTCTAGCCAAGTTTCAAGCTGCTGGACTTGGCAGGACAACTGCCAAAGCAGGTATGCCTATGTCTCTATCCGATCAAAAGAACCTTTTCAGTTTTGAGAACCCAAGATTAAGATTTGGAGAAGGGTCACTACAACATTTAAGCAACAGTAAGCCAATAAACTTGCTTCACGGAATTCCAACCAACATGGAGCCAAAGCAACTTGCCAATTTGCACCAATCTACCCAACCCCTTGGTAGCTTGAATATGCGAGTCAATTCTCCTGCCACGCAGAACAACCCCTTGCTGATGCAGATGACTCAGTCTCAACCAAGAGGTCAGTTGCTAAGTGAAAATGCCAGTTCTCATGTAACCAGGTATCCGTCATCTTTGGTGCAGCCTACAGTACCAAATGGTATTTCTAGTGGTGTTTTGGGAAATGCAATTGCTGGAACCAGCAACATAACTACTACTTATAACCCTGTTCAACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGCCAGTAATTTCCATCTTAGAAGCACTCCAGGTATAACTAGTATCCCAAATAAAGGTATGTTTCATGAAGAAGGTACCTCTGGTGTTAAAGGATCTGGTGGATTTGTTCAAGGTTATGACATGTTTAATGACCTTCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACAGGCATGACATATGATGCTTCTCAGCATGCAAATCCTTTACAAGGTGAAGGCATGCATCAGAGTAGTCTCCAAAATATTGGTCAACACCACAATAACCTTCTTCTTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATCCTAGCTGTCAGATTAATAACCTCTTCTCTGACCAATATGGTCAGGAGGATCTTGTCAGTGCATTTCTGAAACAGCAAGAAGGCGTTGGAACAGCTGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCCAGTTTAG 1911 0.4375 MNLSHGKGSTSSSPLKAGDTVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRMRKNGLRDVEQSGSMEEGDRPPKGSDDGNYSSSVNEAKSSKKRRDEDEEGDERDDSSTLKKPRVVWSVELHQQFMAVVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLSNSFMSSQEATFGGTSINGIDLQTLSAAGQFPSQSLAKFQAAGLGRTTAKAGMPMSLSDQKNLFSFENPRLRFGEGSLQHLSNSKPINLLHGIPTNMEPKQLANLHQSTQPLGSLNMRVNSPATQNNPLLMQMTQSQPRGQLLSENASSHVTRYPSSLVQPTVPNGISSGVLGNAIAGTSNITTTYNPVQQNSSLLSFPMNQTNEMSASNFHLRSTPGITSIPNKGMFHEEGTSGVKGSGGFVQGYDMFNDLHHQKSHDWDLTNTGMTYDASQHANPLQGEGMHQSSLQNIGQHHNNLLLDNSVRVKAERIPDPSCQINNLFSDQYGQEDLVSAFLKQQEGVGTAENEFDFDGYSLDNIPV* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0338 636 CDD REC_typeB_ARR-like 31 145 - -
Gso9g0338 636 Pfam Response regulator receiver domain 31 139 IPR001789 GO:0000160
Gso9g0338 636 PIRSF RR_ARR_type-B 4 628 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso9g0338 636 MobiDBLite consensus disorder prediction 152 205 - -
Gso9g0338 636 MobiDBLite consensus disorder prediction 183 205 - -
Gso9g0338 636 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 263 IPR017930 -
Gso9g0338 636 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 551 - -
Gso9g0338 636 Pfam Myb-like DNA-binding domain 209 259 IPR001005 -
Gso9g0338 636 SUPERFAMILY CheY-like 28 148 IPR011006 -
Gso9g0338 636 Gene3D - 29 206 - -
Gso9g0338 636 SUPERFAMILY Homeodomain-like 204 264 IPR009057 -
Gso9g0338 636 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 260 IPR006447 GO:0003677
Gso9g0338 636 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 551 IPR045279 GO:0009736
Gso9g0338 636 Gene3D - 207 266 - -
Gso9g0338 636 SMART REC_2 29 141 IPR001789 GO:0000160
Gso9g0338 636 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Gso9g0338 636 MobiDBLite consensus disorder prediction 152 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0338 Gso-Chr9 3281640 3285382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0338 63 636 Response Regulator Gene Family AT3G16857 48.750 3.79e-169 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso9g0338 Response_reg 1.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0338 - K14491 gmx:100781087 1231.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1204 15 12023119 12028185 Gso9g0338 9 3281640 3285382 GST
Gso7g2055 7 44502646 44506940 Gso9g0338 9 3281640 3285382 PCT
Gso17g0246 17 2240286 2244522 Gso9g0338 9 3281640 3285382 PCT
Gso9g0338 9 3281640 3285382 Gso7g2055 7 44502646 44506940 PCT
Gso9g0338 9 3281640 3285382 Gso17g0246 17 2240286 2244522 PCT