Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0335 ATGTCGCTGAGGCCGAATGCTAGAACCGAGGTTCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGACGAGGGTCGCCGGAGGAGGGAGGACAACATGGTGGAGATCCGCAAGAGCAAGCGCGAAGAGAGCCTCCAGAAGAAGCGCCGCGAAGGCCTCCAAGCTCAGCAGCAGTTCCCCACTCCTCTCCAAGCCGCCTCCATTGTCGAGAAAAAGTTAGAGAGCCTTCCTGCGATGGTTGCTGGAGTGTGGTCCGATGATAACAGCCAGCAACTGGAAGCGACCACGCAGTTTCGGAAACTGCTTTCGATCGAGCGCAGTCCTCCAATTGAGGAAGTTATTCAAGCTGGGGTTGTGCCTCGATTTGTGGAGTTTCTTGTTAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCGATATTTGTCAAGCTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCATTGGGGAATGTTGCTGGTGACTCTCCTAAGTGTCGTGATCTTGTTCTCAGCCATGGTGCCCTGATCCCACTGTTGGCCCAGTTGAATGAACATGCAAAACTTTCAATGTTGAGAAACGCAACATGGACCCTGTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCATTTGAGCAGGTGAGGGCAGCGCTTCCTGCTCTAGAACGATTGGTTTTTTCCAATGATGAAGAAGTCTTGACAGACGCATGTTGGGCACTATCATATCTTTCCGATGGAACAAATGACAAAATCCAAGCCGTTATTGAGGCTGGTGTGTGTCCCAGACTGGTGCAGCTCCTTCTGCACCCATCCCCTTCAGTGCTGATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACAGGAGATGATATGCAGACTCAGACTATCATCAATCATGGTGCGCTCCCATGCCTCTTGAGCCTGTTGACACATAATCATAAAAAAAGTATCAAGAAAGAAGCTTGCTGGACCATTTCAAACATTACAGCTGGAAACAGAGATCAGATACAGGCTGTTGTTGAAGCTGGTTTGATTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCTTGGGCAATCTCAAATGCTACATCTGGCGGTACCCATGAGCAGATCAAGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCTGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCATGGGTAACAGTGGAGATGTCAACTTGTATGCACAGATGATAGACGAAGCAGAGGGATTGGAGAAAATTGAAAACCTGCAGAGTCATGACAACAATGAAATATATGAAAAAGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGACGATGATGAGACACTACCTACAGGCGATGGTGCTCAACCTGGTTTTAATTTTGGAAACAATGATGTTCCAGTTCCATCTGGTGGATTCAACTTTAGTTGA 1596 0.4837 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFPTPLQAASIVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNFS* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0335 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 371 399 IPR000225 GO:0005515
Gso9g0335 531 Pfam Importin beta binding domain 12 96 IPR002652 GO:0006606|GO:0061608
Gso9g0335 531 PANTHER IMPORTIN ALPHA 2 522 - -
Gso9g0335 531 PIRSF Importin_alpha 2 530 IPR024931 GO:0005737|GO:0006606|GO:0061608
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 242 272 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 360 399 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 107 147 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 404 441 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 191 232 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 318 358 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 276 314 IPR000225 GO:0005515
Gso9g0335 531 Pfam Armadillo/beta-catenin-like repeat 149 188 IPR000225 GO:0005515
Gso9g0335 531 PANTHER IMPORTIN SUBUNIT ALPHA 2 522 - -
Gso9g0335 531 Gene3D - 74 497 IPR011989 -
Gso9g0335 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 371 IPR000225 GO:0005515
Gso9g0335 531 SUPERFAMILY ARM repeat 6 501 IPR016024 -
Gso9g0335 531 Gene3D - 11 50 IPR036975 GO:0006606
Gso9g0335 531 Pfam Atypical Arm repeat 458 503 IPR032413 -
Gso9g0335 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 117 160 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 317 358 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 191 232 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 360 400 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 275 315 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 149 189 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 234 273 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 403 443 IPR000225 GO:0005515
Gso9g0335 531 SMART arm_5 106 147 IPR000225 GO:0005515
Gso9g0335 531 MobiDBLite consensus disorder prediction 37 57 - -
Gso9g0335 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Gso9g0335 531 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Gso9g0335 531 MobiDBLite consensus disorder prediction 506 531 - -
Gso9g0335 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 160 202 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0335 Gso-Chr9 3257290 3261891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0335 132 392 U-box Gene Family AT3G46510 25.670 3.76e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0335 K15042 - gmx:100780020 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1202 15 11984786 11989166 Gso9g0335 9 3257290 3261891 GST
Gso7g2051 7 44472513 44476984 Gso9g0335 9 3257290 3261891 PCT
Gso17g0250 17 2273937 2278457 Gso9g0335 9 3257290 3261891 PCT
Gso9g0335 9 3257290 3261891 Gso7g2051 7 44472513 44476984 PCT
Gso9g0335 9 3257290 3261891 Gso17g0250 17 2273937 2278457 PCT