Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0327 ATGATGATGTCACACAACTTAACGGGGCAGCTTGTAGGTGCAGAGATACATGGCTTTCACACGTTGGATGATTTGGATGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTGTAATCACAAATATTTCAAGATCAATGCCAAGCCAGTAAATTTGCCCAAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAACCGATGGAAAAACTGTTAAAGAAGCCCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAGGATAAACCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCATATAGTCCTTGTTCATTATCGTGACACACAAGAGTTACAATTGCAAGGTTCTCCTGCTACACCTGTAAATTCAAATTCAAGTTCTGTCTCTGATTCAGCTGCATCTTGGATTCCATCAGATGACTTGGATTCTGGGGTGAAAAGTGCATATGCTGTTGAGCTTAATGACAGTTTAACTGCCAAAAGTCATGAGCAGAGGCTTCATGAGATTAATACACTTGAATGGGATGACCTAGTGGTTTCAAATGCCAACACTTCTACTACATCTAATGGAGGCAATGTTCCATATTCATTTCAACAAAATCAAAGTTTACTGAATGGAAGCTTTGGCAATGTATCCAGTGATCCTTCAGCAGAAATTCCTTCTTTTGGTAATTTAACTCAGCTAGTTTCTGGGAGCGATAGTGCTCCTTATAGTTTCCCAGAAAGTGCTGATCTTTTGAAAAGTAGTCCTTTATCTTCGGGTGGTGTTGACACCTTGGGCACTTTGGTCAACGAAGGCTTGCAAAGTCAGGACAGCTTTGGAACATGGATGAACATCATGTCGGATACACCATGTTCCATAGATGAATCAGCTCTTGAAGCAACAACTTCTTCTGTTCATGTACCATATTCATCACTGGTGGCAGATAATAAGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGAGGTGTCCCCTGTGTGGGCATCTTCCACCGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAATAACTATCAACACCTTGCAAAGTCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGAGTTTACCGGTGCTGGGTATCACCACACTCTCCTGGATTGGTCACTCTCTATTTGAGCTTTGATGGCCATAAGCCCATCAGCAAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGAGCCAACTGCTTTAATAGAAGAGAAATACAACTGGGATGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTTCAGACAAGAGCCTTAACATTTTCTCAAGTAAAGTATCAACTAATGCTCTGAAAGAGGCTAGAAGATTTTCCTTCAAAACATCATATATCTCTAAAAGTTGGCAACACTTGATGAAGTCAATTGATGACAAAACAATTCCATTTTCACAAGTAAAAGATGCCTTGTTTGAAACTTCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCAGCAAGAGTACTGAATATGATGCACAAGGGCAAGCTGCAATTCATTTGTGTGCAATGCTGGGATATAATTGGGCAATTTCCTTATTTACATGGTCGGGCTTGTCGCTGGATTTCCGTGACAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTATGGAATAGAGAAAATGGTTGCAACTTTGTTATCTTGTGGGGCAAGGCCAAACTTGGTCACAGATCCAACTCCACAATATCCAGGTGGATGTACTGCTGCTGATCTTGCTTATGTGAAGGGATGTGATGGCTTAGCTGCTTACCTTTCTGAGAAGTCTCTGGTTGAGCAGTTCAATGACATGAGCTTGGCTGGAAATATCAGTGGCTCACTGGAAACTAGCTCAACTGATCCAGTAAATGCTGCGAACCTTACCGAGGACCAACTTTACCTAAAGGAGACTTTGGAAGCTTACCGTACAGCTGCCGAGGCAGCAGCACGTATTCAAGCTGCATTTAGGGAGCATTCATTTAAATTACGATATCAAGCAGTTGAAATTATGAGCCCAGAGGAAGAAGCACGTCAGATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGTCAAAGAAAAAGATGGCAGCCGCTGCTCGGATTCAGCTTAGATTCCGTACATGGAAGTACCGTAGAGAATTTCTCAATATGCGGCGTCAGGCTATCAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGCACGGAAGCAATATCGGAAAATCGTATGGTCTGTTGGCGTGCTTGAGAAAGTGATCCTGCGTTGGCTTTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATCCTGCCGAGGAGGAGACACAGGAAAGTGATACAATTGCAGAGGAGGATTTCTTTCGCACCAGCCGGAAACAAGCCGAAGAACGTGTTGAGAGGTCTGTCATACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGACACATAATCAAGCAATGCTGGATGAATTAGAAGAATTCCTAAATTCTGAAGATGACATGTTACCCAAGACATAG 2736 0.417 MMMSHNLTGQLVGAEIHGFHTLDDLDVSNTMEEAKSRWLRPNEIHAILCNHKYFKINAKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKPTFVRRCYWLLDKSLEHIVLVHYRDTQELQLQGSPATPVNSNSSSVSDSAASWIPSDDLDSGVKSAYAVELNDSLTAKSHEQRLHEINTLEWDDLVVSNANTSTTSNGGNVPYSFQQNQSLLNGSFGNVSSDPSAEIPSFGNLTQLVSGSDSAPYSFPESADLLKSSPLSSGGVDTLGTLVNEGLQSQDSFGTWMNIMSDTPCSIDESALEATTSSVHVPYSSLVADNKQSSLPEQVFNLTEVSPVWASSTEKTKVLVTGYFHNNYQHLAKSNLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGLVTLYLSFDGHKPISKVVNFEYRTPILHEPTALIEEKYNWDEFRLQMRLAHLLFASDKSLNIFSSKVSTNALKEARRFSFKTSYISKSWQHLMKSIDDKTIPFSQVKDALFETSLKNKLKEWLLERIILGSKSTEYDAQGQAAIHLCAMLGYNWAISLFTWSGLSLDFRDKFGWTALHWAAYYGIEKMVATLLSCGARPNLVTDPTPQYPGGCTAADLAYVKGCDGLAAYLSEKSLVEQFNDMSLAGNISGSLETSSTDPVNAANLTEDQLYLKETLEAYRTAAEAAARIQAAFREHSFKLRYQAVEIMSPEEEARQIVAAMRIQHAFRNYESKKKMAAAARIQLRFRTWKYRREFLNMRRQAIKIQAAFRGFQARKQYRKIVWSVGVLEKVILRWLLKRKGFRGLQVNPAEEETQESDTIAEEDFFRTSRKQAEERVERSVIRVQAMFRSKKAQEEYRRMKLTHNQAMLDELEEFLNSEDDMLPKT* 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0327 911 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Gso9g0327 911 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Gso9g0327 911 Gene3D - 527 665 IPR036770 -
Gso9g0327 911 ProSiteProfiles IQ motif profile. 863 891 IPR000048 GO:0005515
Gso9g0327 911 SMART ANK_2a 596 625 IPR002110 GO:0005515
Gso9g0327 911 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Gso9g0327 911 Gene3D - 757 807 - -
Gso9g0327 911 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Gso9g0327 911 Pfam Ankyrin repeats (3 copies) 548 625 IPR002110 GO:0005515
Gso9g0327 911 SMART iq_5 706 728 IPR000048 GO:0005515
Gso9g0327 911 SMART iq_5 782 804 IPR000048 GO:0005515
Gso9g0327 911 SMART iq_5 861 883 IPR000048 GO:0005515
Gso9g0327 911 SMART iq_5 759 781 IPR000048 GO:0005515
Gso9g0327 911 Gene3D Immunoglobulins 355 450 IPR013783 -
Gso9g0327 911 ProSiteProfiles Ankyrin repeat region circular profile. 596 624 - -
Gso9g0327 911 SUPERFAMILY Ankyrin repeat 554 658 IPR036770 -
Gso9g0327 911 ProSiteProfiles IQ motif profile. 707 736 IPR000048 GO:0005515
Gso9g0327 911 ProSiteProfiles IQ motif profile. 783 807 IPR000048 GO:0005515
Gso9g0327 911 SMART CG_1_2 31 148 IPR005559 GO:0003677
Gso9g0327 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 908 - -
Gso9g0327 911 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Gso9g0327 911 SUPERFAMILY E set domains 360 447 IPR014756 -
Gso9g0327 911 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0327 Gso-Chr9 3145700 3156017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0327 31 895 CAMTA Transcription Factor Family AT3G16940 55.046 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso9g0327 CG-1 1.2e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0327 K21596 - gmx:100776839 1776.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1193 15 11836670 11846664 Gso9g0327 9 3145700 3156017 GST
Gso7g2043 7 44389573 44398289 Gso9g0327 9 3145700 3156017 PCT
Gso17g0257 17 2334236 2348299 Gso9g0327 9 3145700 3156017 PCT
Gso9g0327 9 3145700 3156017 Gso7g2043 7 44389573 44398289 PCT
Gso9g0327 9 3145700 3156017 Gso17g0257 17 2334236 2348299 PCT