Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0303 ATGGGTAGTAGTACTGAAATGGGAATCCCAGAAGAAGAAAAAGAAGAAGAGCTTCTGAAGAAGATAGAACGGCTAGAAGCTGGTCACGCTCACCTCAAGCAAGAAATGTCCAACTTCAAGCTCTTCCAAAACAACAAGTCTCGTTCCAGGTTCGGTGCTGCCACGTGTAACAAACCCTCTTCTTCTCTGCATCAAAATGGAAACAAGTATCTCAATATCTTGCAGTCAATGGGCCACGCTGTTCATGTGTTGGATCTTCAATGTCGTATCATGTACTGGAACCCTAGTGCGGAGAGTATGTATGGTTATGCCGCTGAAGAAGTTCTAGGGCAGGATGGGATTGAGATGCTTGTGGATCCCAGTGATTTTGGCTTAGCCAATGATGTGTTCAACCATGTCAAAAGGGGAGAGAGTTGGAGAGGCCAGCTCCCTGTTAAGAATAAGAGAGGGGATAGGTTCTATGCTGTTACAACCAATACACCTTTCTATGATGATGATGATGGAAGCTTGGTTGGGGTTATTTGTGTCTCCTGTGATTCAAGGCCCTTCCTTGAGACCAGAATTCCCTTGTCAGGGGTAGAGAATGCCGAACCGGATTCAGGTTTGAATGGTCGTAGGAGGAGTAGCATTTCGGATAAGCTTGGCCTTGACTCTAAGCAGCCACTTCAAGCTGCTCTGGCGTCGAAAATTTCAAATTTGGCCTCGAAGGTGAGTAACAAAGTTAAGTCTAGAATCAGGACTGGAGAAAGTAACACCAATGGTGAAGGTGGGAGCGGAGAGAGTCATCATTCTGAGCCTAGTCTCTCGGACTGTGTTCTAGCTGACCAGAGAGAGGATGGTAATTCAAGTGGAGCTAGCACACCCAGAGGAGAGGTGCTAAAATCTCCTTTTGGTGTATTTTCTCATGTTGAAGAGAAATCCGAAGGAAAATCTGTTAGAGGCTCGGGTGAACAAAGTCAAGGAAAACCTATTCACAAGATCATAACTTCTAAGGCTGAAACATGGATTCAAAAGAAAACATCTTCATGGCCATGGAGAGCAAACGATCAGGAAGGATCCGAGGCAAGGAATGTTCGTGTTGCCTGGCCTTGGTCACAGGGCGATCAAGAAAATGAGTCAGTTAATCAGAAGAATATTTCTTCTGGATTGAAGCCAGAAAGCCAAGCAGGAGAAAGTAATCGATCTGGTATTAACGAGGCTTCAGGATCCTGGTCCTCATTTTTTAATGTTAACAGCACAGGTAGTACCAGCAGCTGTGGGAGTGTCAGCAGTAGTGCAGCCAATATTAAAGGGGATGTTGACTCTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATGGGAGAACCAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCAGTGGTATGGATCGGATGTTGCTGTCAAGGTTTTCTCAAAGCATGAATACACAGATGATACAATACTGTCCTTCAAACAAGAGGTGTCTGTCATGAAAAGACTTCGTCATCCAAACATTATTCTCTTTATGGGGGCTGTGACTTCACCTCAACATCTATGCATTGTAACAGAGTTTCTCCCACGTGGAAGCTTGTTTCGTTTGCTTCAGAGAAACACATCCAAAATTGATTGGAGACGGCGAGTTCATATGGCCTTAGATGTTGCACGAGGTGTAAATTATCTTCATCATTGCAACCCACCTATCATCCATCGAGATTTGAAGTCTTCAAATATTCTAGTTGATAAGAATTGGACTGTGAAGGTCGGTGATTTTGGTCTTTCACGTCTTAAACATGAAACATATCTCACTACTAAGACAGGAAAGGGGACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACTGTCAGATGAGAAGTCTGATGTTTACAGCTTTGGGGTGATATTGTGGGAACTTACGACCGAAAAGATCCCGTGGGATACTCTGAACCCAATGCAGGTTGTTGGAGCTGTAGGGTTTATGAACCATCGGCTAGAAATTCCAGAAGATGTTGATCCACAGTGGACTTCTATAATTGAGAGCTGCTGGCACAGCGATCCAGCTTGCCGACCAGCATTCCAGGAACTGTTAGAAAGGCTAAAAGAACTGCAGAGACGGTACACAATTGAATTCCAGGCAGCTCGATCTGCTGTTGAGGAAGGCACTCAAAAGGAGTTCTAG 2178 0.4454 MGSSTEMGIPEEEKEEELLKKIERLEAGHAHLKQEMSNFKLFQNNKSRSRFGAATCNKPSSSLHQNGNKYLNILQSMGHAVHVLDLQCRIMYWNPSAESMYGYAAEEVLGQDGIEMLVDPSDFGLANDVFNHVKRGESWRGQLPVKNKRGDRFYAVTTNTPFYDDDDGSLVGVICVSCDSRPFLETRIPLSGVENAEPDSGLNGRRRSSISDKLGLDSKQPLQAALASKISNLASKVSNKVKSRIRTGESNTNGEGGSGESHHSEPSLSDCVLADQREDGNSSGASTPRGEVLKSPFGVFSHVEEKSEGKSVRGSGEQSQGKPIHKIITSKAETWIQKKTSSWPWRANDQEGSEARNVRVAWPWSQGDQENESVNQKNISSGLKPESQAGESNRSGINEASGSWSSFFNVNSTGSTSSCGSVSSSAANIKGDVDSDCLDYEILWEDLTMGEPIGQGSCGTVYHAQWYGSDVAVKVFSKHEYTDDTILSFKQEVSVMKRLRHPNIILFMGAVTSPQHLCIVTEFLPRGSLFRLLQRNTSKIDWRRRVHMALDVARGVNYLHHCNPPIIHRDLKSSNILVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNELSDEKSDVYSFGVILWELTTEKIPWDTLNPMQVVGAVGFMNHRLEIPEDVDPQWTSIIESCWHSDPACRPAFQELLERLKELQRRYTIEFQAARSAVEEGTQKEF* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0303 725 SUPERFAMILY PYP-like sensor domain (PAS domain) 63 179 IPR035965 -
Gso9g0303 725 MobiDBLite consensus disorder prediction 304 326 - -
Gso9g0303 725 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 55 723 - -
Gso9g0303 725 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 55 723 - -
Gso9g0303 725 MobiDBLite consensus disorder prediction 363 397 - -
Gso9g0303 725 TIGRFAM sensory_box: PAS domain S-box protein 69 173 IPR000014 -
Gso9g0303 725 CDD PAS 80 179 IPR000014 -
Gso9g0303 725 MobiDBLite consensus disorder prediction 364 397 - -
Gso9g0303 725 SUPERFAMILY Protein kinase-like (PK-like) 435 699 IPR011009 -
Gso9g0303 725 ProSiteProfiles Protein kinase domain profile. 447 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0303 725 MobiDBLite consensus disorder prediction 239 268 - -
Gso9g0303 725 MobiDBLite consensus disorder prediction 239 265 - -
Gso9g0303 725 PRINTS Tyrosine kinase catalytic domain signature 521 534 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 PRINTS Tyrosine kinase catalytic domain signature 560 578 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 PRINTS Tyrosine kinase catalytic domain signature 607 617 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 PRINTS Tyrosine kinase catalytic domain signature 626 648 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 PRINTS Tyrosine kinase catalytic domain signature 670 692 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 Pfam Protein tyrosine and serine/threonine kinase 447 699 IPR001245 GO:0004672|GO:0006468
Gso9g0303 725 Gene3D PAS domain 78 181 - -
Gso9g0303 725 Gene3D Transferase(Phosphotransferase) domain 1 526 711 - -
Gso9g0303 725 MobiDBLite consensus disorder prediction 193 216 - -
Gso9g0303 725 ProSitePatterns Serine/Threonine protein kinases active-site signature. 566 578 IPR008271 GO:0004672|GO:0006468
Gso9g0303 725 SMART pas_2 68 135 IPR000014 -
Gso9g0303 725 Pfam PAS fold 70 175 IPR013767 GO:0006355
Gso9g0303 725 Coils Coil 15 35 - -
Gso9g0303 725 Gene3D Phosphorylase Kinase; domain 1 440 524 - -
Gso9g0303 725 SMART serkin_6 447 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0303 725 CDD STKc_MAP3K-like 453 699 - -
Gso9g0303 725 ProSiteProfiles PAS repeat profile. 66 137 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0303 Gso-Chr9 2894773 2901206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0303 11 721 MAP Kinase Kinase Kinase AT3G06620 56.437 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso9g0303 PK_Tyr_Ser-Thr 3.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0303 - - gmx:100815858 1415.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2023 7 44253488 44260510 Gso9g0303 9 2894773 2901206 PCT
Gso17g0274 17 2467969 2476104 Gso9g0303 9 2894773 2901206 PCT
Gso9g0303 9 2894773 2901206 Gso7g2023 7 44253488 44260510 PCT
Gso9g0303 9 2894773 2901206 Gso17g0274 17 2467969 2476104 PCT