Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0294 ATGGCGGAGGAGAAAAGACAAGAGCAAGTAGCGAACCCCAACAACTCATCATCCACCACCATGCCATTTTCCGATCAGATTCCCAACAACAACAACTCCATCATGATGACTTTCCCTTTCCAACAACCATCCACCATCTTCGACCTCATGATGATGCCTTCTTCTTCTTCCTTCATGGACCTGCTCGCCGTGCAGGACTACAACGTGCCGTTATTCGATTGGCTCCCCGCCGGTGTCGCACACCATCCTTCGCCGTCTCCGGCCAGCTCCAACGTCCCCGACTCCTCCGAGGTGCTCAACACGCCGGCGTCGCCTAATTTTTCGTCGATTTCCTCGTCGTCGAATGAGGCTACGGTCAATAACAACTCCGAACAACAGAGTGGGAAAGAATTACAAGAAGAAGAAGGTGGTAATGGAGGCAGAGGAGATAACCAAGATCAAGACAAGACTAAGAAACAGCTAAAAGCGAAGAAGAAGAAGAAGAAGAACCAAAAGAAGCAAAGAGAACCAAGATTCGCGTTCATGACAAAGAGCGAGGTTGATCACCTAGACGATGGTTATAAGTGGCGCAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCTTATCCAAGGAGCTACTACCGTTGCACCAGCGCGGGTTGCGGCGTTAAGAAGCGCGTGGAGCGGTCCTCCGAAGACCCTTCCATGGTGGTGACAACCTACGAGGGTCAGCACACGCACCCGTGCCCTGCTTCGGCTCGGTCTAGCCTTGGCTTCGTGACCCAACCTGCTGCGTTCGGTCCCTCACACTTTATGCTGCCACATCAAGCACAAGCTTCGGCTTTGAGTGTTGTTAGCTCCAGTAGTAACTACATCAATACGACATCGTTTGGTGGGTTTGTTCAGGATCACTCGACCCGTCGTGGTTTTGGACATGAGGCTTTGTTGAGGGACAATGGGCTGCTTCAGGACATTATTGTCCCAACTCAGGTGACCAAGGAGGAGATGGATTGA 993 0.5146 MAEEKRQEQVANPNNSSSTTMPFSDQIPNNNNSIMMTFPFQQPSTIFDLMMMPSSSSFMDLLAVQDYNVPLFDWLPAGVAHHPSPSPASSNVPDSSEVLNTPASPNFSSISSSSNEATVNNNSEQQSGKELQEEEGGNGGRGDNQDQDKTKKQLKAKKKKKKNQKKQREPRFAFMTKSEVDHLDDGYKWRKYGQKAVKNSPYPRSYYRCTSAGCGVKKRVERSSEDPSMVVTTYEGQHTHPCPASARSSLGFVTQPAAFGPSHFMLPHQAQASALSVVSSSSNYINTTSFGGFVQDHSTRRGFGHEALLRDNGLLQDIIVPTQVTKEEMD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0294 330 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 53 319 - -
Gso9g0294 330 MobiDBLite consensus disorder prediction 1 30 - -
Gso9g0294 330 MobiDBLite consensus disorder prediction 153 167 - -
Gso9g0294 330 MobiDBLite consensus disorder prediction 84 127 - -
Gso9g0294 330 SUPERFAMILY WRKY DNA-binding domain 175 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0294 330 Pfam WRKY DNA -binding domain 184 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0294 330 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 53 319 IPR044810 GO:0003700
Gso9g0294 330 MobiDBLite consensus disorder prediction 128 152 - -
Gso9g0294 330 MobiDBLite consensus disorder prediction 81 172 - -
Gso9g0294 330 SMART WRKY_cls 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0294 330 MobiDBLite consensus disorder prediction 8 30 - -
Gso9g0294 330 Coils Coil 144 169 - -
Gso9g0294 330 Gene3D WRKY domain 167 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0294 330 ProSiteProfiles WRKY domain profile. 178 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0294 Gso-Chr9 2810224 2812424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0294 150 328 WRKY Transcription Factor Family AT2G47260 50.739 2.78e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g0294 WRKY 1.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0294 - - gmx:100127422 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1162 15 11363742 11366578 Gso9g0294 9 2810224 2812424 GST
Gso9g0294 9 2810224 2812424 Gso7g2011 7 44139202 44142197 PCT
Gso9g0294 9 2810224 2812424 Gso17g0291 17 2600634 2603731 PCT