Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0292 ATGCTTTGGTGTACGTCAAGGCATGATTTATATTTTTGTTCACGTTACAAAATTGGTCATTTGAATGCACTAACTTCCAGGACTACTGAAGTGTTGGATGTGAAAGGGCATGTAGTTCCATCTAAGGAACATCCTGGAAACCACATGCATGGATTTACGAAGACATGTATTGAGGCAATGGCTGTAGGGCATAAGTTGTTGATTATTGGAGGCAATTATGGAGAACTAATTTGCAAACACTTAAATCGTCCAGGAGTTAGTTTTTGTTTCCAATTAGAGAATGAAGCAAAGATAAATTCTATTGAGATTTTTAAGCGTCCCACTGCCACCAGTGAAGCTATTAATTTCGTGGCTTCGGACCAAGGTGGTGGTGTGGATATCTTTGATGTAGAGAAGACATTTCAGTTTTCACATTTTCAATTCCCATGGCCAGTGAAACATGCTTCATCGAGCCCAGATGGAAGACAACTTGTAGTGGTTGGAGATGACCCAGAAGGAAGATTAGTGGATTCTGAATCAGGATCGACCATCCAATCTTTTCGAGGACACTTTGGCTGTTCATGTTCATCGGCATGGCATCCTGATGGGAACATGTTTGCTACTGGAAACACAGACAGAACATGTCGAATATGGGATGTTCGGAATTTGTTACAACCTGTTGCTGCTCTTGAGGGCAATGCTACAGCCATTTCTTCAATAAGTTTCACATCTGATGGAAGGTTTATGGCAATGTGTGAAGACGTTGATTTTGTGCATGTCTATGATGTGCAGGACGCGTTTAGGAGAGAGCAGGAGATCGATTTGTTTGGACATGTGTCAGGTTTATCTTTTAGTCCTGACACCGAATATCTTTTTATCAGTGTCTCCATTGATACTGTTCCAACCCTTTTATCGTACCAGCGGCGACACAGGATCTACCACTACCTGGATTCTATGAATTGA 942 0.4151 MLWCTSRHDLYFCSRYKIGHLNALTSRTTEVLDVKGHVVPSKEHPGNHMHGFTKTCIEAMAVGHKLLIIGGNYGELICKHLNRPGVSFCFQLENEAKINSIEIFKRPTATSEAINFVASDQGGGVDIFDVEKTFQFSHFQFPWPVKHASSSPDGRQLVVVGDDPEGRLVDSESGSTIQSFRGHFGCSCSSAWHPDGNMFATGNTDRTCRIWDVRNLLQPVAALEGNATAISSISFTSDGRFMAMCEDVDFVHVYDVQDAFRREQEIDLFGHVSGLSFSPDTEYLFISVSIDTVPTLLSYQRRHRIYHYLDSMN* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0292 313 Gene3D - 109 311 IPR015943 GO:0005515
Gso9g0292 313 SUPERFAMILY WD40 repeat-like 64 297 IPR036322 GO:0005515
Gso9g0292 313 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 2 312 - -
Gso9g0292 313 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 2 312 - -
Gso9g0292 313 Pfam WD domain, G-beta repeat 175 212 IPR001680 GO:0005515
Gso9g0292 313 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 215 IPR001680 GO:0005515
Gso9g0292 313 SMART WD40_4 261 298 IPR001680 GO:0005515
Gso9g0292 313 SMART WD40_4 173 212 IPR001680 GO:0005515
Gso9g0292 313 SMART WD40_4 216 255 IPR001680 GO:0005515
Gso9g0292 313 SMART WD40_4 129 170 IPR001680 GO:0005515
Gso9g0292 313 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0292 Gso-Chr9 2799218 2800920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0292 189 289 U-box Gene Family AT2G33340 30.693 1.21e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0292 - - gmx:100814268 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1161 15 11354455 11357648 Gso9g0292 9 2799218 2800920 GST