Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0275 ATGGAAGTGAAAGGAATAAGGGCAAGCAACTCCACCACCACCACCACCACAATCCAAAGTGAGGATGAGATGGACCTTCGAAGAGGTCCTTGGACCGTCGATGAGGACCTTGCTCTCATCAATTACATTGCCAATCACGGTGAAGGTCGATGGAACTCTCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGTCCTGATGTTCGACGTGGAAACATCACACTTGAAGAACAGCTTCTTATTCTTGAACTCCACGGTCGCTGGGGAAACCGTTGGTCTAAAATTGCTCAATATTTGCCGGGAAGAACCGATAATGAGATTAAAAACTATTGGAGAACCCGTGTCCAAAAGCATGCCAAGCAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGATGCCATGCGCTATCTTTGGATGCCGAGGCTGGTGGAGCGCATTCAAGCCGCCGCGGCTGCCACCACCACCGTGGCGGCTGCGGGTTCTCCAACGGCATCTGCCAGTGCTACCACAACCATCACCACCAACAACAACACCACCACATACAACTACTACGACAACAACAACCTTAACAACAGTTTTGAGGTGCACAGTGGGAACATGATGGTGAGAAATCCAACAATCATGAACAACAATAACTTTTGTGGTTCACATAGTTACACTCCCGAGAATAGTAGCACGGGTGCATCATCGGATTCGTTTGGTACACAGGTTTCACCTGTCTCGGACTTGACTCAGGATTATTACAGTAATGTCACGGCTGGGAATAATAACAACAATAACCCTAATCCTGATCAGTATTACCAACAAGCACATGATCAACTGAGTTTCTTAGACTGCATCACAAGCCCATCAGGGTTGTTCGATTTCCAACCCATGGAACCAAACACCCCGTGGATTAATCTGAGTAATGTTGGGGACACGTCCAACGGTTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACAATTCTCTGACAACAACATGTGA 1023 0.4663 MEVKGIRASNSTTTTTTIQSEDEMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHGRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAATTTVAAAGSPTASASATTTITTNNNTTTYNYYDNNNLNNSFEVHSGNMMVRNPTIMNNNNFCGSHSYTPENSSTGASSDSFGTQVSPVSDLTQDYYSNVTAGNNNNNNPNPDQYYQQAHDQLSFLDCITSPSGLFDFQPMEPNTPWINLSNVGDTSNGFWNVENMLLFQQFSDNNM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0275 340 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Gso9g0275 340 SMART sant 80 128 IPR001005 -
Gso9g0275 340 SMART sant 27 77 IPR001005 -
Gso9g0275 340 MobiDBLite consensus disorder prediction 1 20 - -
Gso9g0275 340 CDD SANT 96 124 IPR001005 -
Gso9g0275 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Gso9g0275 340 Gene3D - 25 81 - -
Gso9g0275 340 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Gso9g0275 340 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 336 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso9g0275 340 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Gso9g0275 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 130 IPR017930 -
Gso9g0275 340 CDD SANT 30 75 IPR001005 -
Gso9g0275 340 MobiDBLite consensus disorder prediction 1 21 - -
Gso9g0275 340 Gene3D - 85 148 - -
Gso9g0275 340 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Gso9g0275 340 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Gso9g0275 340 PANTHER MYB TRANSCRIPTION FACTOR 1 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0275 Gso-Chr9 2640218 2642653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0275 21 326 MYB Transcription Factor Family AT3G06490 53.870 3.39e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g0275 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0275 K09422 - gmx:100805341 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1149 15 11168594 11170962 Gso9g0275 9 2640218 2642653 GST