Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0272 ATGATCGTGAGCCAGAACATGGTGACGGAGGCGGAAATTATTTGCAAGCAGAACATTCCGATGTTGGACGTGAAGAAGTACCACCTTCGCGTGGCGCAAGAGCTCGGCGTTAACGTTAAGGTCGTCGAGGTTTCTCCCACCTCTAACGGCGTTCCCGTCTTCGGCCACGTACGGGTTTCTTCTGAATCGGTTTCCACCGAAACGACTCGTTTTGAATCGGTTATGGGTTGCTCTGAGATGATTGAAGAATCCATTTTAGAGACTCCTGCTACTGAATTTACACCGAATGTTCGATCTGGTTGCTGTGCTGATATTGGACCGAGGGGGTCTATGGATGATGAGCATATTCAGATAGATGATCTAGCAGCCCACCTTGGATTTGTGTTCAAACACCCTATGCCGAGTGCATTCTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCCGCCTTTGTGAAGAACAATGCTATGAGATTATTATTTGAGGATGCTGATATGCTGCAATCTTATGATGCTGATGCACTTTTTCTGAAGAAGTTGGAAGATTCTCATCGGAGGGCATTTTTGGGCGCAGACCTTGCCTTGGCTGATGAGCAAAGTGTTAGTAGTTCCTGTGGAACAACGGCGTTGACCGCCCTTGTACTTGGAAGGCATTTGATGGTTGCTAATGCTGGTGACTGTCGAGCTGTTCTTTGTAGGCGAGGAGTTGCCGTTGATATGTCCCAAGATCACAGGCCAAGTTATTTACCAGAACGAAGGAGAGTGGAGGAGTTAGGTGGTTTCATTGATGATGGGTATCTCAATGGTTATCTTTCTGTGACTCGTGCCCTTGGAGATTGGGACTTGAAATTTCCACTAGGTTCTGCGTCACCTCTTATTGCTGAGCCGGATGTTCAGGTGGTCACATTGACAGAGGACGACGAGTTCCTGATCATTGGGTGTGATGGTATTTGGGATGTAATTTCAAGCCAGGATGCAGTTAGTTTTGTGCGGCGTGGATTAAGAAGGCATGACGATCCTCAACAATGTGCCAGAGAGCTTGTTAAGGAAGCATTGCGCCTACACACATCAGATAATCTTACTGTGATTGTTATCTGCTTGTCCCCTGTCCAAAGCATTGTCGAATCATGTCCACCCCAGAGGCGAAGATTCAGAGCTTGTTCTTTGTCTGAAGAGGCCAGGAACAGATTAAGGAGCTTGCTAGAGGGAAACTGA 1218 0.4737 MIVSQNMVTEAEIICKQNIPMLDVKKYHLRVAQELGVNVKVVEVSPTSNGVPVFGHVRVSSESVSTETTRFESVMGCSEMIEESILETPATEFTPNVRSGCCADIGPRGSMDDEHIQIDDLAAHLGFVFKHPMPSAFYAVFDGHGGPDAAAFVKNNAMRLLFEDADMLQSYDADALFLKKLEDSHRRAFLGADLALADEQSVSSSCGTTALTALVLGRHLMVANAGDCRAVLCRRGVAVDMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDLKFPLGSASPLIAEPDVQVVTLTEDDEFLIIGCDGIWDVISSQDAVSFVRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSPVQSIVESCPPQRRRFRACSLSEEARNRLRSLLEGN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0272 405 Pfam Protein phosphatase 2C 108 360 IPR001932 -
Gso9g0272 405 SMART PP2C_4 88 366 IPR001932 -
Gso9g0272 405 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 392 - -
Gso9g0272 405 Gene3D - 83 372 IPR036457 -
Gso9g0272 405 PANTHER PROTEIN PHOSPHATASE 2C 7 392 IPR015655 GO:0004722|GO:0006470
Gso9g0272 405 SMART PP2C_SIG_2 113 368 IPR001932 -
Gso9g0272 405 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Gso9g0272 405 CDD PP2Cc 97 368 IPR001932 -
Gso9g0272 405 ProSiteProfiles PPM-type phosphatase domain profile. 98 368 IPR001932 -
Gso9g0272 405 SUPERFAMILY PP2C-like 92 370 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0272 Gso-Chr9 2576210 2578743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0272 1 404 PP2C-type Phosphatase Gene Family AT1G48040 57.740 1.63e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0272 K14803 - gmx:100798957 791.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1989 7 43923955 43926589 Gso9g0272 9 2576210 2578743 PCT
Gso17g0315 17 2810769 2813215 Gso9g0272 9 2576210 2578743 PCT
Gso9g0272 9 2576210 2578743 Gso7g1989 7 43923955 43926589 PCT
Gso9g0272 9 2576210 2578743 Gso17g0315 17 2810769 2813215 PCT