Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0266 ATGGCGACGGCGGAGGCAGCTTCTACTGGGCTTGGTCCCAGATATGCACCTGATGACCCTACCCTTCCTCAACCGTGGAAGGGGTTGATTGATGGCAGCACTGGTCTTTTATACTATTGGAATCCTGAAACCAATGTTACACAATACGAAAAACCGACGCCACCTGTGCCTGCGCCTGTGGCTTCTGCGCCGAGCTTGGCACCTATACCAGCGGCTCATACAATGCAGCCTGGCGGGATGATGCAGCAGCACGGGCAGCAGATGCTGCAAGTACAATCCTCGCAACAGCATCTTGCCCAACAGCATGGCCAATCGATGCTGCCACAGCAGCAGCAGCAGCAGCAGCAGAGTCCCCATATCACACATGTTACTCAGCAGCAGTCCTCTCAGGGTGCTCAGGCAGCACAGCAGCAGAACCATCACGGGCAGCAAATGATGCAGCAGCCTCAAGGACATCAAGCCAGGCAGCCAATGATGCAACCGCAAGGACAGCAAATGCATCATCAGATGCCGCCGCAGGCGATCCATTCCCAGCATTTTGGGCAAGGAATGCCTCAGGATCAGGGCTCTCATATTGTACAACCACAAGCACATCAATTCACTTCCCAAAACATGCATTACATGTCGTATCAGCAAAATGTGATTACATCCAGGCAACCAAACTCCCAGCACATTCAGCCAAACATGGTATCACCCGGGCAACCTAACTCTCAGCAGGTTCAGCATAACATGCATGGTCAGCCCTTTGAAAACCAACAAACTACATATCCAAAGGTAGAGGTAGCGGAGTTTAAAAATGGAAGCCAGGTTGGACATTCGCTGTCTCATTATCCACAAAGGAGTGCCTTGCCCGTTCAGAACAACCAGAACAATCCTGCTGAAGTTGGTTCTGGTCAAGTGCCTAATGTAGGTGTCAATGCTGGCCAACCACAGCAATTCAGGGCCTTATCTGGCAGTATGCAACAGTCACCCTCTGGATCTGATTTATATTACCAACATGGTCCTAACTTTCATAGCCAGATGAGCCCAGGCATGATGCATGGTCATCCATCCAATGTCCACCCTGCTGGCCAAAAGATGGGTCACGAGGATAATTTACATGGTAGAGCAGGGAATGAGTATGACTATAATTCTACCAAAGATATGTCAACAATGGGTTGTCAGCAGCCAGATATAACTCCAATACCGATTCCAAGAAATCAGCAGGATATGAGGATTGGCAATGCTCCTTTTCAAAATGTAATGCCAAGTGGAAATGGAAGTGGTATTGCTGGGAATGCCGTGCCTAGCATGTTTGTTCCTCCAATAGGAGGACCTTCACCTCTCTCTACTAACCCTTCAATGAGGCCTCCTTATATGGGTTCTTCAGATGCTACTGATCTCTCACCGGCTGAAATTTACTGTCAGCAACATGAAGTTACAGCTACGGGTGACAACATTCCACCTCCTTTCATGACATTTGACGCTACAGGGTTCCCTCCAGAGATATTGAGAGAGATATATTCTGCTGGTTTCTCAAGTCCAACACCAATACAGGCTCAAACATGGCCTGTTGCACTACAAGGTAGAGACATAGTCGCAATTGCCAAAACAGGCTCTGGGAAAACATTAGGCTACTTAATGCCTGCCTTCATTCTTCTTAGACAGCGACGTAATAATTCTCTGAATGGCCCCACTGTCTTGGTTTTGGCTCCAACACGTGAACTTGCGACACAGATCCAAGATGAGGTCATCAAATTTGGCCGATCATCGCGAGTCTCTTGCACGTGCTTATACGGTGGAGCACCTAAAGCCCTTCAACTAAAAGAGTTAGACCGGGGAGCAGACATTGTTGTTGCCACACCTGGTCGGCTCAACGATATACTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAGATTGTGAATGAGATTCCACCTCGCAGACAAACTCTCATGTACACGGCAACCTGGCCAAAAGAAGTAAGAAAAATTGCTAGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAATGTGGATGAGCTTGCTGCAAATAAAGCTATAACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAGAGGCGTTTGGAGCAGATTCTCAGATCCCAAGAACGGGGTTCTAAGGTTATAATATTTTGTTCCACAAAGAGGTTATGTGACCAGCTTGCTCGTAGTATTGGCCGGACTTTTGGGGCTGCTGCAATTCATGGCGACAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGTCAGTTCCGGACTGGGAAGTCACCAATTCTGGTTGCGACTGATGTTGCAGCTCGTGGGCTTGATATTAAGGATATAAGGGTGGTGATCAATTATGATTTCCCCACTGGAATTGAGGACTATGTGCACCGTATAGGAAGAACTGGAAGGGCGGGTGCTACTGGAGTGTCATATACCTTTTTCTCTGAGCAGGACTGGAAACATGCGGGTGATTTAATCAAAGTTTTAGAGGGTGCTAATCAGCACGTGCTTCCAGAGTTAAGACAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGATCGAGGTGGGATGAGTCGATTTGACTCTGGTGGTGGTGGTGGTGGGCGCTGGGATACTGGTGGTCGTGGTGGCTTTGGTGGTCGTGGAGGTGGCATGAGGGATGGCAGTTTTGGTGGACGTGGCAGTGGCTTTGGGGGACGTGGTGGCGGCATTAGGGATGGTGGTTTTGGTGGACGTGGCGGTGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGAGGTAGTGGGCAAGGTGGGCGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTAGGGGATCCGGTGGCCCTCGTGGGGGTCATGTTGGTTGGGGTAGGGGTGAACGTGGTATGGATGATCGGTACAACATGGAGGGGCGTGGACAAGGTCGTGGACGTGGAAGATTTGACAATAGAAGAGATGTTTCTTCCAAAGGTAGAGGCAGAAGTCATAGTCGTAGCCCTGAAAGAGTCCGAACATGGGACTATAGCAAAAGTAGCAGCAGAAGTCGTAGCAGAAGTAGAAGCAGGAGTTGGAGCAGGGGCCGTAGTCGAAGCCGCAGCTGGTCTCGTGGTCGTAGTCGCAGCTATAGCCGTAGTATTAGTCCACGTCGTAGTCGTAGCCGTAGCCGTGGTCGAAGTTACAGCCGCAGTCGTAGCCGCAGCCCCAGTTATGATAGGCGTGATAGGTCAGATCAACAACTTCCTGATCAAAAGGATATCAGGGCGCATGAAGTAGGAACTTCAGATCCAAGAATGCTTCCCGTGTCTTCTGGTCTTGGCACACAAGGGAATTCGTTTTTGGGAACTGAACAAGTGGAGCAGCAACCTATTGTTAGTAGCACTGATCCAGGTAATCCAGAAGCTGTAGCAGACCTTAGTCATCAATCAGTTTCTGATATTTAG 3501 0.491 MATAEAASTGLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPTPPVPAPVASAPSLAPIPAAHTMQPGGMMQQHGQQMLQVQSSQQHLAQQHGQSMLPQQQQQQQQSPHITHVTQQQSSQGAQAAQQQNHHGQQMMQQPQGHQARQPMMQPQGQQMHHQMPPQAIHSQHFGQGMPQDQGSHIVQPQAHQFTSQNMHYMSYQQNVITSRQPNSQHIQPNMVSPGQPNSQQVQHNMHGQPFENQQTTYPKVEVAEFKNGSQVGHSLSHYPQRSALPVQNNQNNPAEVGSGQVPNVGVNAGQPQQFRALSGSMQQSPSGSDLYYQHGPNFHSQMSPGMMHGHPSNVHPAGQKMGHEDNLHGRAGNEYDYNSTKDMSTMGCQQPDITPIPIPRNQQDMRIGNAPFQNVMPSGNGSGIAGNAVPSMFVPPIGGPSPLSTNPSMRPPYMGSSDATDLSPAEIYCQQHEVTATGDNIPPPFMTFDATGFPPEILREIYSAGFSSPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQDEVIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQMALRGPSNFGKDRGGMSRFDSGGGGGGRWDTGGRGGFGGRGGGMRDGSFGGRGSGFGGRGGGIRDGGFGGRGGGFGGRGGMRDGGSGQGGRGDFFPGRGNRGRGSGGPRGGHVGWGRGERGMDDRYNMEGRGQGRGRGRFDNRRDVSSKGRGRSHSRSPERVRTWDYSKSSSRSRSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISPRRSRSRSRGRSYSRSRSRSPSYDRRDRSDQQLPDQKDIRAHEVGTSDPRMLPVSSGLGTQGNSFLGTEQVEQQPIVSSTDPGNPEAVADLSHQSVSDI* 1167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0266 1166 CDD SF2_C_DEAD 704 833 - -
Gso9g0266 1166 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 311 954 - -
Gso9g0266 1166 Gene3D - 461 694 IPR027417 -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 977 1034 - -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 1085 1112 - -
Gso9g0266 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 719 863 IPR001650 -
Gso9g0266 1166 SUPERFAMILY WW domain 17 56 IPR036020 GO:0005515
Gso9g0266 1166 MobiDBLite consensus disorder prediction 69 190 - -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 1 27 - -
Gso9g0266 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 839 IPR027417 -
Gso9g0266 1166 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 485 513 IPR014014 GO:0003724
Gso9g0266 1166 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Gso9g0266 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 690 IPR014001 -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 286 305 - -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 866 1166 - -
Gso9g0266 1166 Pfam Helicase conserved C-terminal domain 716 824 IPR001650 -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 1035 1081 - -
Gso9g0266 1166 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Gso9g0266 1166 Pfam DEAD/DEAH box helicase 509 679 IPR011545 GO:0003676|GO:0005524
Gso9g0266 1166 SMART ultradead3 504 707 IPR014001 -
Gso9g0266 1166 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 636 644 IPR000629 -
Gso9g0266 1166 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 311 954 - -
Gso9g0266 1166 SMART ww_5 21 54 IPR001202 GO:0005515
Gso9g0266 1166 Gene3D - 695 865 IPR027417 -
Gso9g0266 1166 MobiDBLite consensus disorder prediction 1120 1148 - -
Gso9g0266 1166 Pfam WW domain 22 52 IPR001202 GO:0005515
Gso9g0266 1166 MobiDBLite consensus disorder prediction 79 190 - -
Gso9g0266 1166 SMART helicmild6 740 824 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0266 Gso-Chr9 2523157 2530249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0266 473 862 Eukaryotic Initiation Factors Gene Family AT3G19760 33.760 2.32e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0266 K12823 - gmx:100807830 1589.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1141 15 11014390 11022303 Gso9g0266 9 2523157 2530249 GST