Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0248 ATGGCCCATCCAGCTGTTAATGGTGGTGGTGATAACGGCGTTCCGATGATTTTAACTGATCCAGATGTATTTGTTTGTTGTGGGTGTCGTGATACATTAACCATTCCAATCTACGAGTGCTCCAAAGGGCACGTAATTCTTTGTTCTCCCTGCTGTAACAAGCATGGGTACAAGTGTCCCTTTTGCTCAATGTTCATCGGGGACAAGCGTTGCCGAGCTATTGAGGCAGTGATGGAATCAATGAAAACCGTGTGCTGTTATGCAAAACATGGTTGTAATGCAATTGTGAGGTACAGTGAGAAACGTGATCATGAGAAGACATGCACCTTTGTACCATGTTTATGTCCCCAGCCACGTTGTGATTGGATTTCCAATTCCAACGAATTAGGGCAACATTTCAAAGTGAAGCATTTCTACAAGAGAATACCATTTAAATATGGAGAGTTTTTTTATGTGTCTTTGAGGCGGGACACGACGACTCGTGTTCTTCAAGCGGTAAGTGATGGAAAATTGTTTGTGATCAGCAATGATAAGAGGGAGAAGAAAAATTCATTGATTCTTTTCCATGTTGGGCCTAACTCGTGGATCCCTAAGTTTGATTATGAAGTTAGGGCAACGTCTGATGGTGCAGTTCTATTGCCTCAAACTTTTGTGGAGACAACTCAAGGACTGAAGTTTGAGTTTTCTTTACTAAGCTTTTTACACATTCCAATTGAGATGTGGCCTTGTAATGGACAGATCAAACTGCAGTTTCTGATTACTACCGTGAGTGGTGCTGATAAGGTTGTTAGTGAAGAAAACAATGACCAAAACGGGAGGCCCAAAAGGATCAGGAACCGCCCAGTTGGATTGAACGACTTTTATCCCTAA 870 0.4218 MAHPAVNGGGDNGVPMILTDPDVFVCCGCRDTLTIPIYECSKGHVILCSPCCNKHGYKCPFCSMFIGDKRCRAIEAVMESMKTVCCYAKHGCNAIVRYSEKRDHEKTCTFVPCLCPQPRCDWISNSNELGQHFKVKHFYKRIPFKYGEFFYVSLRRDTTTRVLQAVSDGKLFVISNDKREKKNSLILFHVGPNSWIPKFDYEVRATSDGAVLLPQTFVETTQGLKFEFSLLSFLHIPIEMWPCNGQIKLQFLITTVSGADKVVSEENNDQNGRPKRIRNRPVGLNDFYP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0248 289 SUPERFAMILY TRAF domain-like 84 213 - -
Gso9g0248 289 MobiDBLite consensus disorder prediction 264 289 - -
Gso9g0248 289 MobiDBLite consensus disorder prediction 266 280 - -
Gso9g0248 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 256 IPR044286 -
Gso9g0248 289 ProSiteProfiles Zinc finger SIAH-type profile. 80 138 IPR013010 GO:0008270
Gso9g0248 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 256 - -
Gso9g0248 289 Pfam Seven in absentia protein family 70 204 IPR018121 GO:0005737|GO:0006511|GO:0007275
Gso9g0248 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 133 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0248 22 137 C3H Transcription Factor Family AT2G41980 33.898 1.64e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0248 K04506 - gmx:102662420 619.002