Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0239 ATGGTTCTGAAATTTGTTTATATCATAATAATTTTGATGATATGGTGCATGTATCCATTAACATCTGCACAGTATGAGAATGGGACTATAACATCTGCGCAGTACGAGAATACGACTATAGCATCACGACCAGGTTGTGATAGCAAATGTGGAAATGTTTCCATTCCTTTCCCTTTCGGAATGCACGATCCCAAATGCTATGCAAGCAACCAGTTTGAAATAGAATGCAGACACAATAACAATACTTCTCAAGGTCATCAGAAACCCATACCCCACCTAAAGTACATAAATTTGGAGGTAATGTATATTGATATTCAATACGGTACGGTTGGGATCAAGAATCCGATTTTCCATCCTGGCTGTGGCAAGACTGTTACAGGCATAAATCTTGAAGGCAGTCCTTTCGTGTATTCCCAGAATTACAACTCATTTGTTGGCGTAGGTTGCCAAAACGCCGCCATAATGTTGTCAAACGACACGATACTTACAGCCTGTATGTCGGTGTGTTACGAGCACCTCGAAAAAGGCAATGACATCGACATTTCGAGTTGTCGTGGCTCCTACTGCTGCGAGACTTCACTGCCGCCGTATCTTTCAGCATACAACATCTCAACTGAAACCGTGGAAGTGAAAAGTAATATCAAAGCAGAATGTTCAAATTACTTGCTGATTAGAGCAGAATATAGTAACTTCAAGTACGAGTACGATGAGTACAATTCCAGTTACTGGGTTCCCACTCTTGGAGACCTAAAGAAACAAAAAGATGTTCCTGCGGTGCTTGAATGGGAGATTCCGATTCACACGCCCAACAATTCCTTCCCTGAATTCCGTACAGATGCATATGGCCATGGCAGCTACAACTGCAGTTACACTAATGTTACATCTTCACTATATCCACAATCGGGTTGGAGATGTTCTTGCAGCGATGGCTTCGAGGGAAACCCCTACATACAAGAAGGCTGTAAATTAAGTCTCGATGGACGCAAGATAATAATAGATCCGACGAAAAGTTATGGAAAGGTGGCCATGATAGGAGTTTTTTCAAGCATCGGGACCATCATTCTACTCTTTGGTTTGTGGCGGTTGCGTAAAGTTGTAAGGAAAAAGATAGCAAAGAAACGCAAAGAAAAGTTCTTCAAACAAAATGGAGGATTGTTGTTAGAACAAAGACTATCTACTGGTGAAGTTAATGTTGACAAAACTAAACTCTTTAGCTTAAAGGAATTAGGGAAGGCCACTGATCACTTTAATATAAACAGAATACTTGGAAAAGGAGGTCAAGGTACAGTTTACAAAGGTATGTTAGTAGATGGAAAAATTGTTGCAGTGAAAAAATTTAAGGTCAACGGAAATGTTGAAGAATTCATCAACGAATTTGTCATTCTTTCACAAATTAACCACAGAAATGTGGTTAAGTTGTTGGGATGTTGTTTGGAGACTGAAATCCCTTTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTATGAATATTTACATGGACAAAATGATGAGTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAGTGGCTGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCATAGAGATGTGAAGTCAACAAATATATTATTGGATAAGAAGTATAAGGCAAAAGTAGCAGACTTTGGGGCATCAAGAATGGTTTCCATTGAAGCCACTCACCTCACTACTGCAGTTCAAGGAACTTTTGGATACTTAGATCCTGAATATTTTCATACAAGTCAATTGACAGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTCTTGTTGAACTTTTAACAGGACAAAAACCAATATCCTCAGTGAACGAACAAGGACTTCAAAGTTTAGCTTCATATTTTCTTCTTTGTATGGAGGAAAATCGTTTTTTTGATATTGTTGATGCAAGAGTCATGCAGGAAGTGGAGAAAGAACACATAATTGTAGTTGCCAATCTTGCAAGAAGATGCTTACAGTTGAATGGGAGAAAGCGACCAACTATGAAAGAAGTCACATTAGAATTGGAAAGTATCCAAAAACTGGAAAACCAGTGTAATGCACAAGAGCAACAAGAAGAACTTGAGCTTGCTGGAAATGAAGATAGCCAATTTTGGGCTGCGTATTCTACAACTTCGACTGCAGGGCAAACTTCAGACAGCAAAACATCAACCTTGGAGATTATGCCTATTCTTATCAAATAA 2229 0.3917 MVLKFVYIIIILMIWCMYPLTSAQYENGTITSAQYENTTIASRPGCDSKCGNVSIPFPFGMHDPKCYASNQFEIECRHNNNTSQGHQKPIPHLKYINLEVMYIDIQYGTVGIKNPIFHPGCGKTVTGINLEGSPFVYSQNYNSFVGVGCQNAAIMLSNDTILTACMSVCYEHLEKGNDIDISSCRGSYCCETSLPPYLSAYNISTETVEVKSNIKAECSNYLLIRAEYSNFKYEYDEYNSSYWVPTLGDLKKQKDVPAVLEWEIPIHTPNNSFPEFRTDAYGHGSYNCSYTNVTSSLYPQSGWRCSCSDGFEGNPYIQEGCKLSLDGRKIIIDPTKSYGKVAMIGVFSSIGTIILLFGLWRLRKVVRKKIAKKRKEKFFKQNGGLLLEQRLSTGEVNVDKTKLFSLKELGKATDHFNINRILGKGGQGTVYKGMLVDGKIVAVKKFKVNGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLHGQNDELPMTWDMRLRIATEVAGALFYLHSAASQPIYHRDVKSTNILLDKKYKAKVADFGASRMVSIEATHLTTAVQGTFGYLDPEYFHTSQLTEKSDVYSFGVVLVELLTGQKPISSVNEQGLQSLASYFLLCMEENRFFDIVDARVMQEVEKEHIIVVANLARRCLQLNGRKRPTMKEVTLELESIQKLENQCNAQEQQEELELAGNEDSQFWAAYSTTSTAGQTSDSKTSTLEIMPILIK* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0239 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 535 547 IPR008271 GO:0004672|GO:0006468
Gso9g0239 742 SMART serkin_6 416 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0239 742 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 22 739 - -
Gso9g0239 742 Pfam Protein kinase domain 417 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0239 742 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 739 IPR045274 GO:0007166
Gso9g0239 742 Pfam Wall-associated receptor kinase galacturonan-binding 46 112 IPR025287 GO:0030247
Gso9g0239 742 CDD STKc_IRAK 422 687 - -
Gso9g0239 742 Gene3D Transferase(Phosphotransferase) domain 1 490 713 - -
Gso9g0239 742 ProSiteProfiles Protein kinase domain profile. 416 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0239 742 Gene3D Phosphorylase Kinase; domain 1 388 489 - -
Gso9g0239 742 Coils Coil 680 700 - -
Gso9g0239 742 SUPERFAMILY Protein kinase-like (PK-like) 398 684 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0239 Gso-Chr9 2271773 2275759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0239 46 738 Receptor kinase-like Gene Family AT1G16260 42.577 5.17e-178 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso9g0239 Pkinase 8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0239 - - gmx:100801993 1469.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1118 15 10723268 10728938 Gso9g0239 9 2271773 2275759 GST