Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0238 ATGGTTCTGAAATTTGCTTATATCATAGTAATTTTGATGATATGGTGCATGTATCCATTAACATCTGCACAGTATCTCGATGAGACTATAACATCCTCGCAGTACGAGAATATGACTATAGCACGACCAGGTTGTGATAGGAAATGTGGAAATGTTTTCATTCCTTTCCCTTTCGGAATGGGCAGGGAAAATTGCTATGCAAGCTCGTGGTTTGAAATAGATTGCAGAAACAATAATACTACTACTAATTCATCAGGTGAACAGAAACCTTACCTCAAATACATAGATTTGGAGGTAAAATTCATTGATCTCTGGAATGAGGCTTTGATCATCATGAACCCTATTTATCAGAGTGGGAAGAACTGTGAAAGGGACAAGACAGGAGGAATAAATCTGAAAGGAGGAAGTCCTTTTGTGTATTCCGCGCGTTACAACACATTCCTGGCCGTAGGTTGCGGAAACACTGCTTCCTTCTGGTCAAACGGAGAGGAAGTTAGAGCTTGTGCTTCCATGTGCAATGGCGATGACCTCATCAAAGTTGCTAATTGTCGTGGCAGAAAATGCTGCCAGACGTCACTTCCGCGGCATCTTTCAGAATATAACGTGAGTTTTGATGGGCAAGAGTGTGCTTACGGGCTGATTATAGCAGTTAGGTTGGGTTACTGGAATCTGACGATTAAGGACGTAAAGCATTTAAATGAAGTTCCTGCAGTGCTTGAATGGGAGATTCCATTTGACACTTTTTACTCTAACATTTCCTTCCTTATTGACCCTGCTGTTGCTATCTGCTACAACACTTCTCTTAAACAACATCCAGACTACTATTCTGGTAAACTTTGTCGGTGCAGGTATGACGACGACGACGACTTCAAGGGCAGTCCCTACATCCGGGGAAGCTGCAAAGGCCCGCCGCCGCCGCCGCCGCCAGACATCAAAAGTCATGGGAAGTGGGCCATAATAGGAGTTTTTTCAAGCCTCGGGACCATCATTCTACTCTTTGGTTTGTGGTGGTTGCGTAAAGTTGTAAGGAAAAAGATAGCAAAGAAACGCAAAGAAAAGTTCTTCAAACAAAATGGAGGATTGTTGTTAGAACAAAGACTATCTACTGGTGAAGATAATGTTGACAAAACTAAACTCTTTAGCTTAAAGGAATTAGGAAAGGCCACTGATCACTTTAATATAAATAGAATACTTGGAAAAGGAGGTCAAGGTACAGTTTACAAAGGTATGTTAGTAGATGGAAAAATTGTTGCAGTGAAAAAATTTAAGGTCAACGGAAATGTTGAAGAATTCATCAACGAATTTGTCATTCTTTCACAAATTAACCACAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACTGAAATCCCATTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTATGAATATTTACTTGGACAAAATGATGAGTTACCAAATGCTTGGGAAATGCGTTTGAGAATTGCCACTGAAGTTGCTGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCATAGAGATGTGAAGTCAACAAATATATTATTGGATGAGAAGTATAAGGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTTTCCATTGAAGCCACTCACCTCACTACAGCAGTTCAAGGAACTTTTGGATACTTAGATCCTGAATATTTTCAGACGAGTCAATTCACAGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTCTTGTTGAACTTTTAACAGGACAAAAACCAATATCCTCAGTGAAAGAACAAGGACTTCAAAGTTTAGCTTCGTATTTTCTTCTTTGTATGGAGGAAAATCGTTTGTTTGATATTGTTGATGCAAGAGTCATGCAGGAAGGGGAGAAAGAACACATCATTGTAGTTGCCAATCTTGTAAGAAGATGCTTACAGTTGAATGGTAGAAAGCGACCAACTATGAAAGAAGTCTCATTAGAATTGGAAAGAATCCAAAAACTGGGAAAACAGTGTAATGCACAAGAGCACCAAGAAGAACTTGAGCTTGCTGGAAATGAAGATAGCCAATTTTGGGCTGCGTATTCTACAACTTCGACTGCAGGGCAAACTTCAGACAGCAAAACATCAACCTTGGAGATTATGCCTATTCTTATCAAATAA 2157 0.3978 MVLKFAYIIVILMIWCMYPLTSAQYLDETITSSQYENMTIARPGCDRKCGNVFIPFPFGMGRENCYASSWFEIDCRNNNTTTNSSGEQKPYLKYIDLEVKFIDLWNEALIIMNPIYQSGKNCERDKTGGINLKGGSPFVYSARYNTFLAVGCGNTASFWSNGEEVRACASMCNGDDLIKVANCRGRKCCQTSLPRHLSEYNVSFDGQECAYGLIIAVRLGYWNLTIKDVKHLNEVPAVLEWEIPFDTFYSNISFLIDPAVAICYNTSLKQHPDYYSGKLCRCRYDDDDDFKGSPYIRGSCKGPPPPPPPDIKSHGKWAIIGVFSSLGTIILLFGLWWLRKVVRKKIAKKRKEKFFKQNGGLLLEQRLSTGEDNVDKTKLFSLKELGKATDHFNINRILGKGGQGTVYKGMLVDGKIVAVKKFKVNGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLLGQNDELPNAWEMRLRIATEVAGALFYLHSAASQPIYHRDVKSTNILLDEKYKAKVADFGASRMVSIEATHLTTAVQGTFGYLDPEYFQTSQFTEKSDVYSFGVVLVELLTGQKPISSVKEQGLQSLASYFLLCMEENRLFDIVDARVMQEGEKEHIIVVANLVRRCLQLNGRKRPTMKEVSLELERIQKLGKQCNAQEHQEELELAGNEDSQFWAAYSTTSTAGQTSDSKTSTLEIMPILIK* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0238 718 ProSiteProfiles Protein kinase domain profile. 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0238 718 Pfam Protein kinase domain 393 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0238 718 CDD STKc_IRAK 398 663 - -
Gso9g0238 718 Gene3D Phosphorylase Kinase; domain 1 364 465 - -
Gso9g0238 718 Pfam Wall-associated receptor kinase galacturonan-binding 45 98 IPR025287 GO:0030247
Gso9g0238 718 SMART serkin_6 392 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0238 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 511 523 IPR008271 GO:0004672|GO:0006468
Gso9g0238 718 Gene3D Transferase(Phosphotransferase) domain 1 466 688 - -
Gso9g0238 718 SUPERFAMILY Protein kinase-like (PK-like) 376 660 IPR011009 -
Gso9g0238 718 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 22 715 - -
Gso9g0238 718 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 715 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0238 Gso-Chr9 2255707 2266923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0238 8 714 Receptor kinase-like Gene Family AT1G16260 42.240 5.92e-176 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso9g0238 Pkinase 8.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0238 - - gmx:100799848 1214.52