Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0237 ATGGTTCTGAAATTTGCTTATATCATAGTAATTTTGATGATATGGTGCATGTATCCATTAACATCTGCACAGTATCTCGATGAGACTATAACATCCTCGCAGTACGAGAATATGACTATAGCACGACCAGGTTGTGATAGGAAATGTGGAAATGTTTTCATTCCTTTCCCTTTCGGAATGGGCAGGGAAAATTGCTATGCAAGCTCGTGGTTTGAAATAGATTGCAGAAACAATAATACTACTACTAATTCATCAGGTGAACAGAAACCTTACCTCAAATACATAGATTTGGAGGTAAAATTCATTGATCTCTGGAAAGAGGCTTTGATCATCATGAACCCTATTTATCAGAGTGGGAAGAACTGTGAAAGGAACAAGACAGGAGGAATAAATCTGAAAGGAGGAAGTCCTTTTGTGTATTCCGCGCGTTACAACACATTCCTGGCCGTAGGTTGCGGAAACACTGCTTCTTTCTGGTCAAACGGAGAGGAAGTTAGTGGTTGTGCTTCCATGTGCAATGGCGATGACCTCATCAAAGTTGATAATTGTCGTGGCAGAAAATGCTGCGAGGCGTCACTTCCGCGGTATCTTTCAGAATATAACGTGAGTTTTGAAGGCCAAGAGTGTGCTTACGGGCTGATTATAGCAGTTAGGTTGGGTTACTGGAATCTGACGATTAAGGACGTAAAGCATTTAAATGAAGTTCCTGCAGTGCTTGAATGGGAGATTCCATTTGACACTTTTTACTCTAACATTTCCTTCTTTCGTGACCCTGATATTGTATCCTGCTACGACACTTATCTTAAACATTCACTAAACAACTCTTCTCAGTCTTCTGGTAGACTGTGTCATTGCAGATATGGTGCCCCCCCGGCCAATCCCTACATCCGGGGAAGCTGCTTAGGAGAAAAAAGGAAAACTCGAGTAAGGTGGGCCATAATAGGAGTTTCTTCAAGCCTCGGAACCATCCTTTTACTCCTCGTTTTGTGGTGGTTGAACAAATTTGTAAGGAAAAATATAGAAAAGAAACGCAAGGAAAAATTCTTCAAACAAAATGGAGGATTGTTGTTAAATCAAAAGCTCTCTTCAGGAGAAGCCAATGTTGACAAAATTAAACTCTTTACTCTAAAGGACTTAGACAAGGCCACTGATCACTTTAATATAAATAGAGTACTCGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGGATGCTAGTAGATGGAAATATTGTTGCAGTGAAAAAATTTAAGGTCAACGGAAATGTTGAAGAATTCATCAACGAATTTGTCGTTCTTTCACAAATTAACCACAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACTGAAATCCCATTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTATGAATATTTACTTGGACAAAATGATGAGTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAGTTGCTGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCATAGAGATGTGAAGTCAACAAATATATTATTGGATGAGAAGTATAAGGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTTTCCATTGAAGCCACTCACCTCACTACTGCAGTTCAAGGAACTTTTGGATACTTAGATCCTGAATATTTTCATACGAGTCAATTCACAGAGAAGAGTGATGTCTACAGCTTTGGAGTGGTTCTTGTTGAACTTTTAACAGGACAAAAACCAATATCCTCAGTGAAAGAACAAGGACTTCAAAGTTTAGCTTCATATTTTCTTCTTTGTATGGAGGAAAATCGTTTGTTTGATATTGTTGATGCAAGAGTCATGCAGGAAGGGGAGAAAGAAGACATCATTGTAGTTGCCAATCTTGCAAGAAGATGTTTACAGTTGAATGGGAGAAAGCGACCAACTATGAAAGAAGTCACATTAGAATTGGAAAGTATCCAAAAACTGGAAAACCAGTGTAATGCACAAGAGCAACAAGAAGAACTTGAGCTTGCTGGAAATGAAGATAGCCAATTTTGGGCTGCGTATTCTACAACTTCGACTGCAGGGCAAACTTCAGACAGCAAAACATCAACCTTGGAGATTATGCCTATTCTTATCAAATAA 2139 0.3918 MVLKFAYIIVILMIWCMYPLTSAQYLDETITSSQYENMTIARPGCDRKCGNVFIPFPFGMGRENCYASSWFEIDCRNNNTTTNSSGEQKPYLKYIDLEVKFIDLWKEALIIMNPIYQSGKNCERNKTGGINLKGGSPFVYSARYNTFLAVGCGNTASFWSNGEEVSGCASMCNGDDLIKVDNCRGRKCCEASLPRYLSEYNVSFEGQECAYGLIIAVRLGYWNLTIKDVKHLNEVPAVLEWEIPFDTFYSNISFFRDPDIVSCYDTYLKHSLNNSSQSSGRLCHCRYGAPPANPYIRGSCLGEKRKTRVRWAIIGVSSSLGTILLLLVLWWLNKFVRKNIEKKRKEKFFKQNGGLLLNQKLSSGEANVDKIKLFTLKDLDKATDHFNINRVLGKGGQGTVYKGMLVDGNIVAVKKFKVNGNVEEFINEFVVLSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLLGQNDELPMTWDMRLRIATEVAGALFYLHSAASQPIYHRDVKSTNILLDEKYKAKVADFGASRMVSIEATHLTTAVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLVELLTGQKPISSVKEQGLQSLASYFLLCMEENRLFDIVDARVMQEGEKEDIIVVANLARRCLQLNGRKRPTMKEVTLELESIQKLENQCNAQEQQEELELAGNEDSQFWAAYSTTSTAGQTSDSKTSTLEIMPILIK* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0237 712 CDD STKc_IRAK 392 657 - -
Gso9g0237 712 Pfam Protein tyrosine and serine/threonine kinase 387 652 IPR001245 GO:0004672|GO:0006468
Gso9g0237 712 Pfam Wall-associated receptor kinase galacturonan-binding 45 98 IPR025287 GO:0030247
Gso9g0237 712 Gene3D Phosphorylase Kinase; domain 1 358 459 - -
Gso9g0237 712 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 709 IPR045274 GO:0007166
Gso9g0237 712 Gene3D Transferase(Phosphotransferase) domain 1 460 683 - -
Gso9g0237 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Gso9g0237 712 SMART serkin_6 386 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0237 712 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 22 709 - -
Gso9g0237 712 ProSiteProfiles Protein kinase domain profile. 386 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0237 712 Coils Coil 650 670 - -
Gso9g0237 712 SUPERFAMILY Protein kinase-like (PK-like) 367 654 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0237 Gso-Chr9 2236402 2241854 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0237 37 710 Receptor kinase-like Gene Family AT1G79680 40.392 1.86e-171 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso9g0237 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0237 - - gmx:100799848 1346.26