Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0236 ATGGTTCTGAAACGTGTTTATATGGTCATTTTGTTGATATGGTGCATATATCCATTAGAATCTGTAATACCGCCGCATCGGTATCGGAATCAGAATCAGACGATAGCACGACACGGTTGCAATCCAAAATGTGGAAATGTTTCTGTTTTTTTCCCTTTCGGAATGGACGATCCCAAATGCTATGCAAGCAAGCCGTTTGAAATAGAATGCAGACACAATAACAATACTTCTCAAGGTCATCGGAAACCCGTACCCTACCTCAAGTATATAAGTTTGGAGGTAATGTACATTGATATTCAAGACGGTACGGTTGGGATCAAGAATCCGATTTTCCATCTTGGTTGTGGCAAGACAATTACAGGCATAAATCTGGAAGGCAGTCCTTTCGTGTATTCCCAGAATTACAACTCATTTGTCGGCGTAGGTTGCCAAAACGCCGCCATATTGTCGTCAAACGACACGATACTTACAGCCTGTGTGTCGATGTGTTACGACGACCTCGAAAAAGGCAATGACATCGACATTTCGAGTTGTCGTGGCTCCTACTGCTGCGAGACTTCACTGCCGCCGTATCTTTCAGCATACAACATCTCAACTGAAACCGTGGAAGTGAAAAGTAATATCAAAGCAGAATGCTCAAATTACTTGCTGATTAGAGCAGAATATAGTAACTTCAAGTACGTGTACGATGAGTACAATTCCAGTTACTGGGTTCCCATTCTTGGGGACCTAAAGAAACAAAAAGATGTTCCTGCGGTGCTTGAATGGGAGATTCCGATTCACACGCCCAACAATTCCTTCCCTGAATTCCGTACAGATGGCAGCTACAACTGCAGTTACACTAATGTCACATCTTCACTATATTCACAATCGGGTTGGAGATGTTCTTGCAGAGATGGCTTCGAGGGAAATCCCTACATACAAGAAGGCTGTAAATTTGTAGCTACGGGGGATTCCGAGCTTCGAGACAAAAGGAAAACTCGAGAAAAGTGGGCCATAATAGGAGTTTCTTCAAGCCTCGGAACCATCATTTTACTCCTCGGTTTGTGGTGGTTGAACAAAGTTGTAAGGAAAAATATAGAAAAGAAACGCAAGGAAAAATTCTTCAAACAAAATGGAGGATTGTTGTTAAAACAAAGACTCTCTTCAGGAGAAGCCAATGTTGACAAAATTAAACTCTTTACTCTAAAGGACTTAGACAAGGCCACTGATCACTTTAATATAAATAGAGTACTAGGAAAGGGAGGCCAAGGTACCGTTTACAAAGGGATGCTAGTAGATGGAAATATTGTTGCAGTGAAAAAATTTAAGGTCAACGGAAATGTTGAAGAATTCATCAATGAATTTGTGATTCTTTCACAAATTAACCATAGAAATGTGGTTAAGTTGTTAGGATGTTGTTTGGAGACTGAAATCCCATTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTATGAATATTTACTTGGACAAAATGATGACTTACCAATGACATGGGATATGCGTTTGAGAATTGCCACTGAAGTTGCTGGAGCTCTATTTTACTTGCACTCAGCTGCTTCTCAACCCATTTATCACAGAGACATCAAGTCAAGAAATATACTATTGGATGGGAAGTATAAAGCAAAAGTAGCAGACTTTGGTGCATCAAGAATGGTTTCCATTGAAGCCACTCACCTCACTACTGCAGTTCAAGGAACTTTTGGATACATGGACCCTGAATATTTCCATACTAGTCAATTAACAGATAAAAGTGATGTCTACAGCTTTGGAGTGGTTCTTATTGAACTTTTAACTGGGAAAGAGCCAATATCTTCTGCAAAACAACAAGAGCTTAGAAGTTTGGCTTCATATTTCCTTCTCTGTATGGAGGAAAATCGTCTTTTTGATATTATTGATGAAAGAATCGTGAAGGAAGCGGAAAAAGAACACATTGTTGTTGTTGCCAATCTTGCAAGAAGATGCTTAGAGTTGAAAGGGAAAAGACGACCAACTATGAAAGAAGTCACATCAGAATTGGAAAGTATCCAAAAATCAAGAAAACAGTCTGCTTCACAAGAACAACATGATGCTGGAATTGATGAGTGCCAATTTTGGTCTGTGATTTCTCCAACTTCAAATTTGGGGGAAACTTCGGATAGCAAAGCATCAACCTTGGAGATTATGCCTACTCATCCTAATCATTGA 2190 0.3973 MVLKRVYMVILLIWCIYPLESVIPPHRYRNQNQTIARHGCNPKCGNVSVFFPFGMDDPKCYASKPFEIECRHNNNTSQGHRKPVPYLKYISLEVMYIDIQDGTVGIKNPIFHLGCGKTITGINLEGSPFVYSQNYNSFVGVGCQNAAILSSNDTILTACVSMCYDDLEKGNDIDISSCRGSYCCETSLPPYLSAYNISTETVEVKSNIKAECSNYLLIRAEYSNFKYVYDEYNSSYWVPILGDLKKQKDVPAVLEWEIPIHTPNNSFPEFRTDGSYNCSYTNVTSSLYSQSGWRCSCRDGFEGNPYIQEGCKFVATGDSELRDKRKTREKWAIIGVSSSLGTIILLLGLWWLNKVVRKNIEKKRKEKFFKQNGGLLLKQRLSSGEANVDKIKLFTLKDLDKATDHFNINRVLGKGGQGTVYKGMLVDGNIVAVKKFKVNGNVEEFINEFVILSQINHRNVVKLLGCCLETEIPLLVYEFIPNGNLYEYLLGQNDDLPMTWDMRLRIATEVAGALFYLHSAASQPIYHRDIKSRNILLDGKYKAKVADFGASRMVSIEATHLTTAVQGTFGYMDPEYFHTSQLTDKSDVYSFGVVLIELLTGKEPISSAKQQELRSLASYFLLCMEENRLFDIIDERIVKEAEKEHIVVVANLARRCLELKGKRRPTMKEVTSELESIQKSRKQSASQEQHDAGIDECQFWSVISPTSNLGETSDSKASTLEIMPTHPNH* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0236 729 CDD STKc_IRAK 412 677 - -
Gso9g0236 729 Gene3D Phosphorylase Kinase; domain 1 378 479 - -
Gso9g0236 729 MobiDBLite consensus disorder prediction 708 729 - -
Gso9g0236 729 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 29 716 - -
Gso9g0236 729 MobiDBLite consensus disorder prediction 668 688 - -
Gso9g0236 729 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 29 716 IPR045274 GO:0007166
Gso9g0236 729 ProSiteProfiles Protein kinase domain profile. 406 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0236 729 Gene3D Transferase(Phosphotransferase) domain 1 480 701 - -
Gso9g0236 729 SUPERFAMILY Protein kinase-like (PK-like) 390 677 IPR011009 -
Gso9g0236 729 SMART serkin_6 406 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0236 729 Pfam Wall-associated receptor kinase galacturonan-binding 40 106 IPR025287 GO:0030247
Gso9g0236 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Gso9g0236 729 Pfam Protein tyrosine and serine/threonine kinase 407 674 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0236 Gso-Chr9 2225759 2232613 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0236 3 690 Receptor kinase-like Gene Family AT1G16260 43.300 2.04e-177 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso9g0236 PK_Tyr_Ser-Thr 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0236 - - gmx:100799320 1361.67