Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0235 ATGCAAACTCACTTCAATACATTGAGATCTCGTAGTACAGTTTTAGCCACAATGATTCTGCAACTTATACCATTTTCTATAATCGTTTTGATAATATTCCCTCTGGCATCGGAAACATATCAGATTATAGCAAAACCTGGTTGTAATTCAACATGTGGAGAAGTTTCCATCCCTTACCCTTTTGGGATGAAAGATCCCGAATGCTACGCCGACGGGTGGTTTGAAATAGAATGCAAAGACACTTCTCAAGGTCAAAAACCCTACCTGAAGTCTTTAAATCTCCAAGTGACATCCATCAGTGAGTTCCCAGGCTTGGTTACAATCATGAATCCAATTTACCGTTGGAACTGCCCAAGCAAAAGAGCAATGCCAGCAATAAAAGACCTGAGAGGAAGCCCTTTCGTGTATTCCCAGGAGTCGAACAAATTCGTTGCCGTTGGTTGCAACAACCTTGCCTTTTTGAAGTCCGGTGGGGATACTGTCGGTGGTTGTGTGTCCATTTGCGACAACAATGAAGAATTCAAAAACATGGACTTCATTAGCAGTGATGGTTGCCATGGCAGGTACTGCTGCGAGACTTCACTGCCAAACTATCTTTCAGAATATAATGCAACACTGCAAGATTTTAACAACCAGAACAGTAGTGTTGAGAGTCATCAGTGTAGTTCTGCATTTATTGTAAACAAGTACTGGTCCCAGCGATACTATATGCCTCATTTAAACAACATGGACTATGTTGATGCGGTGCTTGAGTGGGAGATTTTGAACAACACACTTTCCGATTCTGTCCTTCAATTTCTTTCAGATCATGCAAGATGTCATGGATCTAATGTCACATCTTCGTTTACCAGAGTCTCAGGTTATACATGTAGATGCATCCAAGGTTACCAGGGCAATCCCTACGTTCGTGGAGGCTGCACCGCCTTGCCAGATTACAATAAAAATCTAACGAAGAAGTGGGCTATAGTAGGTGTTTCGTCAAGCCTGGGATCTATCATTTTGCTTCTTTGTCTATGGTTGTTGTATAAAGTGGTAAGGAAGAGAATGATAAAGAAACGCAAACAAAAGTTCTTCAAAAAGAATGGTGGTTTGTTGTTACAGCAAAGAATGTCATCTAATGAAGTTAATGTAGACAGAGCTATTCTGTTCAGCTTAAAGGATTTAGAGAAAGCCACTGACCGCTTTAACATGAACAGAATTCTTGGGAAGGGAGGCCAAGGTACTGTTTACAAAGGCATGCTAGTAGATGGTAAAATTGTTGCAGTGAAAAAGTTTAAGGTGGAAGGAAATGTTGAAGAATTCATCAACGAGTTTGTCATTCTTTCACAAATTAACAATAGAAATGTGGTCAAGCTGTTAGGATGTTGTTTGGAGACAGAAATTCCTTTGCTGGTTTATGAATTCATTCCTAATGGTAACCTTTTTCAATATTTACATGATCAAAACGAGGACTTACCAATGACATGGGATTTGCGTTTGAGAATTGCAACAGAAATTGCAGGAGCACTGTTTTACTTGCACTCAGTTGCATCTCAACCCATTTATCACAGAGACATCAAATCCACAAATATACTATTGGATGAAAAGTATAGAGCAAAAATTGCAGACTTTGGAGCATCCAGAATAATTTCCATTGAAGATACTCATCTCACCACAGTCGTTCAAGGTACTTTTGGATACTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAAAAAAGTGATGTCTACAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGTCAAAAACCAATATCCTCAGTGAGAACCGCGGAATCCAAGAATTTAGCCTCATATTTTGTTCAGTGTATGGAGGAGGATAATCTTTTTGACATTATCGACAAAAGAGTTGTGAAGGAAGCAGAGAAGGGAAAAATCACTGCAGTTGCTAATCTTGTAAATAGATGTTTAGAGTTGAATGGGAAAAAACGTCCAACTATGAAAGAAGTTACATTTGAATTAGAAAGGATCCAGAGATTGGATAAGAAATCTAATGCAGAGCAAAACCGTGAAGAAATTGAGCTTGCTAGAATTGAAGATTATCAACCTTGGGTTGGATATTCTATATCAAATTCGTTGGCAACTCTTGGCAGTGAATCAATCTCATCAGACTCGGAGGTCATACCTATTGTTACATTATAA 2169 0.3882 MQTHFNTLRSRSTVLATMILQLIPFSIIVLIIFPLASETYQIIAKPGCNSTCGEVSIPYPFGMKDPECYADGWFEIECKDTSQGQKPYLKSLNLQVTSISEFPGLVTIMNPIYRWNCPSKRAMPAIKDLRGSPFVYSQESNKFVAVGCNNLAFLKSGGDTVGGCVSICDNNEEFKNMDFISSDGCHGRYCCETSLPNYLSEYNATLQDFNNQNSSVESHQCSSAFIVNKYWSQRYYMPHLNNMDYVDAVLEWEILNNTLSDSVLQFLSDHARCHGSNVTSSFTRVSGYTCRCIQGYQGNPYVRGGCTALPDYNKNLTKKWAIVGVSSSLGSIILLLCLWLLYKVVRKRMIKKRKQKFFKKNGGLLLQQRMSSNEVNVDRAILFSLKDLEKATDRFNMNRILGKGGQGTVYKGMLVDGKIVAVKKFKVEGNVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFQYLHDQNEDLPMTWDLRLRIATEIAGALFYLHSVASQPIYHRDIKSTNILLDEKYRAKIADFGASRIISIEDTHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKPISSVRTAESKNLASYFVQCMEEDNLFDIIDKRVVKEAEKGKITAVANLVNRCLELNGKKRPTMKEVTFELERIQRLDKKSNAEQNREEIELARIEDYQPWVGYSISNSLATLGSESISSDSEVIPIVTL* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0235 722 CDD STKc_IRAK 401 666 - -
Gso9g0235 722 Gene3D Phosphorylase Kinase; domain 1 359 468 - -
Gso9g0235 722 Pfam Wall-associated receptor kinase galacturonan-binding 48 100 IPR025287 GO:0030247
Gso9g0235 722 Gene3D Transferase(Phosphotransferase) domain 1 469 691 - -
Gso9g0235 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Gso9g0235 722 SUPERFAMILY Protein kinase-like (PK-like) 381 661 IPR011009 -
Gso9g0235 722 SMART serkin_6 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0235 722 ProSiteProfiles Protein kinase domain profile. 395 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0235 722 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 720 IPR045274 GO:0007166
Gso9g0235 722 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 35 720 - -
Gso9g0235 722 Pfam Protein kinase domain 396 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0235 Gso-Chr9 2213467 2216578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0235 27 681 Receptor kinase-like Gene Family AT1G16260 45.839 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gso9g0235 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0235 - - gmx:100798794 1373.61