Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0225 ATGGATTCTTCAATGGCAAGTCCTGGAGGGTCTGGTGATGAAGGTTCTCACCAGGGAAGAAGACCCTCCTACAAACGTCTTTCTTCTGCTCAAACAGCCAGACTTGAAAGATTCATCAAGGATTGCCCACACCCTGACGAAGCTCAACGACGTCAATTAGCTTCTGAAATTGGTCTTGAGACTAAACAAATAAAGTTTTGGTTTCAGAATAAGAGGACCCAAATCAAGAATCAACACGAGCGAGCAGATAACACTGCTCTTCGGGTTGAGAATGATAGGATCCATACTGAAAACCTTCTAATGAAAGAGGCACTGAAGAACATGCTTTGCTCATCTTGTGGGGGTGCACCGTGTCAAGAAGAAGATCATGAACATGCAATCCAAAGTATGCAACTTGAAAATATTCAGCTAAAAGAAGAGCATGAGAAAGTGTCTAGCCTTCTTGCAAGGTACTTGGAGAAACAAATGTCACCACCTGAGCTCCAACAACAGGCTTTTAATATTCCTATCATAGGATCAAGTTCACATGCTCCAGAACTTGAAAATTCATCACTAAACTATGAGATTGGTGGAAGTTCATCAAGTCATGGTCCAAGTCGTTATGGTATGCAAATTATGGTTAGTGATGACCATAACTTATTGAGAAGTGAAGGTATAGAAAAGGCCCTTATGTTTAAGGTTGCTGCTGCCGCAATGAACGAATTGATTAGGCTTATTCGGATTAATGAGCCCTTATGGACCAAGTCTTCAACTCAAGATGGGAAGCCAATTCTTCAGCATGAAAATTATGAGAAAATATTTCCAAGGACCAATAGTTTCAAAGGTGCCAATCTGCGTGTAGAAGCAACAAAAGAATCAGGAATAGTGAGCATTAATAGCATTCAACTAATTGACATGTTTCTGGATCCGGACAAATGGGTTAATCTGTTCCCAACAATTGTTACAAAGGCAGAAACAATGAAAGTAATTGAAAATGGTTTGGTAGGAAGTCGAAGTGGAGCCTTGCAGCTGATGTTTGAGCAAATGCATGTTCTTTCACCTTTGGTGCAACCTCGCGAGTTTCAATTCCTTCGCTATTGTCAGCAAATTGAAGAAGGTGTATGGGTGATAGCAGATGTGTCATTTGATTCCTTTCGACAAAAAACCTCTTTTTTTCACTCTTGGAGACATCCCTCTGGATGCATGATTCAAGAAATTCCTAATGGCTGTTCCATGGTTACTTGGGTTGAACATGTGGAAGTGGACGATAAGATCCAAACCCATCAGCTATACAAAGACCTTATTGCTACAGGAATTGCATACGGAGCAGAAAGATGGATTATGGAACTTCAAAGAATTTGCGAGAGATTTGCTTGCTTTTATGTTGAAAGGATACCTAGTCAAGACTCTGGAGGAGTGATCAATTCTCTTGAAGGAAGGAGGAGTGTAATGAATTTTTCGCATCGTATGATCAAAGTCTTTTGTGAGAGTTTAACCATGTCAGGTAACTTGGACTTCCCACATATGAATATGGAGAACAATAGCGGTTTGAGGGTTTCTATTCGCAAAAACAGAAACCACCTTGGTCAACCAAAGGGCATGATTGTTGTAGCTGCTACCTCCATTTGGCTTCCTCTCCATTACATGAAAGTTTTTGAGTTCTTCACTGATGATAGAAGACGTGCTCAGTGGGATGTTCTTTGCTTTGGAAATGATGCGAACAAGGTTGCACACATCTCAAATGAAATTCATCCTGGCAATTGTATATCTATTTATCGGCCATTCATCCCTAATGAGAACAATGCGCTGGTTCTTCAAGAGAGTTTCACAACTCCCATGGGATCGTATGTTGTGTATGCTCCAACCGATGTAGCAGCTATGAATTCGGCCATAAACGGAGAAGACTCTTCAATGTTACCAGTTCTTCCATCAGGTTTTGTCATCTCTGCAGATGGTGAACCAAATGCAGCTTTGGGAGCATTTAATAGTTCAGATATTGAAAGATTGGGAGGCTCATTACTGACTGTGGCTTTCCAAATACTTGCTTCAAGTCCAGATGGAATCAATATGTCAAACATGGAATCTGTGGAAGCTGTGAACTCCCTTTTAACCTCAACAATCCTAAAAGTCAAGGATGCTTTGAATTGCAACAACTTGGAGTGA 2142 0.4076 MDSSMASPGGSGDEGSHQGRRPSYKRLSSAQTARLERFIKDCPHPDEAQRRQLASEIGLETKQIKFWFQNKRTQIKNQHERADNTALRVENDRIHTENLLMKEALKNMLCSSCGGAPCQEEDHEHAIQSMQLENIQLKEEHEKVSSLLARYLEKQMSPPELQQQAFNIPIIGSSSHAPELENSSLNYEIGGSSSSHGPSRYGMQIMVSDDHNLLRSEGIEKALMFKVAAAAMNELIRLIRINEPLWTKSSTQDGKPILQHENYEKIFPRTNSFKGANLRVEATKESGIVSINSIQLIDMFLDPDKWVNLFPTIVTKAETMKVIENGLVGSRSGALQLMFEQMHVLSPLVQPREFQFLRYCQQIEEGVWVIADVSFDSFRQKTSFFHSWRHPSGCMIQEIPNGCSMVTWVEHVEVDDKIQTHQLYKDLIATGIAYGAERWIMELQRICERFACFYVERIPSQDSGGVINSLEGRRSVMNFSHRMIKVFCESLTMSGNLDFPHMNMENNSGLRVSIRKNRNHLGQPKGMIVVAATSIWLPLHYMKVFEFFTDDRRRAQWDVLCFGNDANKVAHISNEIHPGNCISIYRPFIPNENNALVLQESFTTPMGSYVVYAPTDVAAMNSAINGEDSSMLPVLPSGFVISADGEPNAALGAFNSSDIERLGGSLLTVAFQILASSPDGINMSNMESVEAVNSLLTSTILKVKDALNCNNLE* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0225 713 SUPERFAMILY Bet v1-like 220 450 - -
Gso9g0225 713 CDD homeodomain 20 79 IPR001356 GO:0003677
Gso9g0225 713 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Gso9g0225 713 SUPERFAMILY Homeodomain-like 15 82 IPR009057 -
Gso9g0225 713 CDD START_ArGLABRA2_like 221 448 - -
Gso9g0225 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 16 709 - -
Gso9g0225 713 SMART START_1 226 449 IPR002913 GO:0008289
Gso9g0225 713 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Gso9g0225 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 709 IPR042160 -
Gso9g0225 713 Pfam Homeodomain 23 76 IPR001356 GO:0003677
Gso9g0225 713 Coils Coil 120 140 - -
Gso9g0225 713 ProSiteProfiles START domain profile. 217 452 IPR002913 GO:0008289
Gso9g0225 713 SUPERFAMILY Bet v1-like 505 676 - -
Gso9g0225 713 Gene3D - 225 434 IPR023393 -
Gso9g0225 713 Pfam START domain 227 449 IPR002913 GO:0008289
Gso9g0225 713 Gene3D - 11 93 - -
Gso9g0225 713 SMART HOX_1 20 82 IPR001356 GO:0003677
Gso9g0225 713 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0225 Gso-Chr9 2093766 2099985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0225 20 708 Homeobox Transcription Factor Family AT1G73360 44.986 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g0225 START 5.1e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0225 K09338 - gmx:100795075 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1110 15 10604174 10610434 Gso9g0225 9 2093766 2099985 GST