Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0224 ATGGATTTTGCCATGGGAGCTGCTGGTGGGTCTGGTGATGATCAACACAATCAGAGCTTAAACAAAGGAAAAAAGACGACCACCTACCGTCGTCATAAAGAGGATCAAAGAACTAGGCTTGAAGAACTGTTCAGAAAGTGCCCAAATCCAGATGAAATCGAAAGACGTCAAATAGCCAAAGATCTCGGGCTTGAGCCAAAACAAGTAAAATTTTGGTTTCAGAATAAGAGGACTCAAAAAAAGACTATATCTGAGCGAGTGGATAATAATGTCCTTCGTGTTGAGAATGAAAGAATGCACAACGAAAACCTCGTACTGAGAGAGGCATTAAAGACTATAATTTGCCCTTCTTGTGGGGGTCCACACAATGAAGATGAAAGGCGTGAACTTTGTCTAGAACAACTTCGTCTTGAAAATGCTCGTCTAAAAGCACAGCATGAGAAGTTGTCTAAGTTTCTTGTACAGCACATGGATAAACCAATTTTGGAACAAAACTTGGATTCCCCTATCAGAGGATCTTCGTCACATGGTCCATTACTAGGAAGTTCTCTAAGACTAAGAGCTGGAAGATCTCGTATGAATCTTGGTGCTTCAACAAGTCATGATTCATTTCAAGATGAAGAAGATACCATGTCAAGCCAAGCTGGGAGCAAAATAATAACACAGATGGAAAAGACAATGATGGCACATATTGCAGTGGCTGCTAAGGATGAATTGCTCAAGCTTTTGCGCACAAATGAGCCCTTATGGGTCAAGTCTTCAACTGATCAGAGATATGTTCTTCATCTTGAATGCTATGAAACGATCTTTCCAAGGATTAACCACTTCAAGAATTCCAAAGCGCGCGTAGAATCATCAAAAGATTCGCGAATTGTCAGAATTAAGGCGAAGGAATTAGTTGACATGCTTTTAAATTCGGAAATTTGGGAAAATCTTTTCTCAAGAATTGTTACAAAAGCGCGCACAATCCAAGTACTTGAAAATGGTTCATTGGAAAATCGAAGTGGAGTTTTGTTGCTGATGCGTGAAGAGATGCACGTTCTTTCACCTTTAGTGCCATCTCGGGAATTCTACTTCCTTCGCTATTGTCACCAAGTTGAAGCTAATGTATGGGTTATAGCAGATGTTTCAGTTGACTGCATGAAAGAGAACAACCATGATCCTAACTGTTGGAGGTTTCCCTCTGGATGCATGATTCAGGGAATTTCTAATGGCATGTGCCAGGTTTCTTGGGTTGAACATGTTGAAGTGGATGAGAAGATCCAAACACATCATCTGTTTAAAGATCTTGTTAATAGAAATATTGCATATGGAGCAGAAAGATGGCTTTTGGAACTTCAAAGAATGTGCGAAAGATTTACTAGTCTTGAAGTTGAATACATACCTAATTATGACATCGGTGGAGTGATCACTACTCTAGGAGGAAGGATGAGTATGATGAAGTTTTCTCATCAAATGGTTAAAAGCTTCTATGGAATTTTAAATATGTCAAGTATCACTGACTTCCCACAACATTTAGCTGATGAGAATACTGGGATTAGGATTTGTGCTCGAAAAGTCACAAACTCAAATCAATCAAATCCCAATATTATAATCACTGCTACTACATCTTTCCGACTTCCTTTGCCTTCTCAAAATGTTTTTGACTTCTTTAGGGATCCAATAAGACGTGTTAAGTGGGATGCTATGTGTTATAAAAGACCTCTACATGAGATTGCACGCATATCCACGGGAACTCATCCCAACAACTATATATCCATTATTCAGCAGCCTATCCACCCAACTGCAAATAATGTGGTGATTATTCAAGAAAGTTGTACCGATCCTCTAGGATCATATGTTGTATATTCTTCAACCAATATACTTGACATAAAGAGGACAATAAATGGAGAAGATTCATCGACAATGCCATTTTTTCCATCAGGCATTGTCATTTCAGAGGAAGGACAATCTATTACAAATGCTCGCGCATCGAGTAGTGGAAATGGGGATGTAAGAACAAGAGGATCACTACTGACTGTAGCTTTCCAAATATTGATGAATAGTTCACCGACCATGATGATGGAATTTGTGACTGTTGTTAACTCTCTCATCACCTCAACAGTCGAAAACATAAATGATGCTTTGATCAGTTCTTTCAATTAA 2145 0.3893 MDFAMGAAGGSGDDQHNQSLNKGKKTTTYRRHKEDQRTRLEELFRKCPNPDEIERRQIAKDLGLEPKQVKFWFQNKRTQKKTISERVDNNVLRVENERMHNENLVLREALKTIICPSCGGPHNEDERRELCLEQLRLENARLKAQHEKLSKFLVQHMDKPILEQNLDSPIRGSSSHGPLLGSSLRLRAGRSRMNLGASTSHDSFQDEEDTMSSQAGSKIITQMEKTMMAHIAVAAKDELLKLLRTNEPLWVKSSTDQRYVLHLECYETIFPRINHFKNSKARVESSKDSRIVRIKAKELVDMLLNSEIWENLFSRIVTKARTIQVLENGSLENRSGVLLLMREEMHVLSPLVPSREFYFLRYCHQVEANVWVIADVSVDCMKENNHDPNCWRFPSGCMIQGISNGMCQVSWVEHVEVDEKIQTHHLFKDLVNRNIAYGAERWLLELQRMCERFTSLEVEYIPNYDIGGVITTLGGRMSMMKFSHQMVKSFYGILNMSSITDFPQHLADENTGIRICARKVTNSNQSNPNIIITATTSFRLPLPSQNVFDFFRDPIRRVKWDAMCYKRPLHEIARISTGTHPNNYISIIQQPIHPTANNVVIIQESCTDPLGSYVVYSSTNILDIKRTINGEDSSTMPFFPSGIVISEEGQSITNARASSSGNGDVRTRGSLLTVAFQILMNSSPTMMMEFVTVVNSLITSTVENINDALISSFN* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0224 714 MobiDBLite consensus disorder prediction 1 35 - -
Gso9g0224 714 Pfam START domain 231 452 IPR002913 GO:0008289
Gso9g0224 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 19 709 - -
Gso9g0224 714 Gene3D - 7 82 - -
Gso9g0224 714 Pfam Homeodomain 29 81 IPR001356 GO:0003677
Gso9g0224 714 SUPERFAMILY Bet v1-like 476 705 - -
Gso9g0224 714 SUPERFAMILY Bet v1-like 222 453 - -
Gso9g0224 714 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Gso9g0224 714 ProSiteProfiles START domain profile. 221 455 IPR002913 GO:0008289
Gso9g0224 714 SMART HOX_1 25 87 IPR001356 GO:0003677
Gso9g0224 714 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Gso9g0224 714 Coils Coil 132 152 - -
Gso9g0224 714 SMART START_1 230 452 IPR002913 GO:0008289
Gso9g0224 714 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 709 IPR042160 -
Gso9g0224 714 CDD homeodomain 30 81 IPR001356 GO:0003677
Gso9g0224 714 CDD START_ArGLABRA2_like 225 451 - -
Gso9g0224 714 Gene3D - 231 488 IPR023393 -
Gso9g0224 714 SUPERFAMILY Homeodomain-like 11 82 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0224 Gso-Chr9 2078243 2087246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0224 24 709 Homeobox Transcription Factor Family AT1G73360 39.604 6.21e-166 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso9g0224 START 1.3e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0224 K09338 - gmx:100794552 1390.56