Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0206 ATGTGTGTAGATTGGGACACTGTATTGCATGTAAATCAGGAAATCATGACTTCTACTCATGACCTCTCAGATAATGAAGCTGATGACCAGCAGCAGTCGGAATCACAAATGGAGCCTTTATCTGCAAATGGAATTTCTTATGCAGGTATTGCTACTCAGAATGTTCAGTATGCAACACCTTCACAGCTTGGAACTGGGCATGCTGTGGTACCGCCCACTTACCCATATCCAGATCCATACTACAGAAGTATCTTTGCTCCCTATGATGCACAAACTTATCCCCCACAACCCTATGGTGGAAATCCAATGGTCCACCTTCAGTTAATGGGAATTCAACAAGCAGGTGTTCCTTTGCCAACTGATACAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAGTATCATGGTATATTAAGACGCAGACAGTCCCGTGCTAAAGCTGAATCAGAAAAAAAGGCTGCAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCACTGAGAAGAGCAAGAGGATGTGGAGGTCGGTTTTTGAATTCAAAGAAAGATGAGAATCAACAGGATGAGGTTGCATCAACTGACGAATCACAGTCCACTATCAATCTCAATTCTGATAAAAATGAGCTTGCACCATCAGATAGAACATCCTAA 660 0.4273 MCVDWDTVLHVNQEIMTSTHDLSDNEADDQQQSESQMEPLSANGISYAGIATQNVQYATPSQLGTGHAVVPPTYPYPDPYYRSIFAPYDAQTYPPQPYGGNPMVHLQLMGIQQAGVPLPTDTVEEPVFVNAKQYHGILRRRQSRAKAESEKKAARNRKPYLHESRHLHALRRARGCGGRFLNSKKDENQQDEVASTDESQSTINLNSDKNELAPSDRTS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0206 219 MobiDBLite consensus disorder prediction 194 213 - -
Gso9g0206 219 PRINTS CCAAT-binding transcription factor subunit B signature 126 148 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 PRINTS CCAAT-binding transcription factor subunit B signature 157 180 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 MobiDBLite consensus disorder prediction 158 173 - -
Gso9g0206 219 MobiDBLite consensus disorder prediction 139 219 - -
Gso9g0206 219 MobiDBLite consensus disorder prediction 18 38 - -
Gso9g0206 219 ProSitePatterns NF-YA/HAP2 subunit signature. 128 148 IPR018362 GO:0003677|GO:0016602
Gso9g0206 219 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 125 180 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 ProSiteProfiles NF-YA/HAP2 family profile. 123 183 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 SMART cbf3 122 183 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 MobiDBLite consensus disorder prediction 141 157 - -
Gso9g0206 219 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 16 200 - -
Gso9g0206 219 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 16 200 IPR001289 GO:0003700|GO:0006355
Gso9g0206 219 Gene3D - 123 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0206 Gso-Chr9 1913133 1918778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0206 15 219 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.072 2.02e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso9g0206 CBFB_NFYA 8.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0206 K08064 - gmx:100784325 402.519