Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0175 ATGGGGGATCAAGGTGTTAATGTTGGGAGAGAGGAAGAGGAAGATGAGTTTTGCAGTTGTTGTGGAGATGAAGATGAGGAAGTGTGGAAAGAGACTGAGGAACCTGTTGTGGAAAAAGGTTTGAAGGATGAGCTTGATGAATTTTCAGTGAAAATGTTCTTTAAGGGGTTGTCAATGGCAGGGGTCGAAAATTTAAGTTCTGGGTTTTCAGGGATTGGAGTGTTCATGGAAAGGTCTTCAGGTCTACCTGCTATAAGGGTGCAGAAAAAGCTTGACTTTTATGCGGAGGAGTCTGTGGTTGACTATTTGGCACTCTTGGATGGGTTGCTGGAAGCTGTGCAGAAAAAGATCCGCAGGGTTTTTGCTTTCACTGATTCTGAGTTGTTGCATGATCAGATAACATTTGGGAAAAAATTGGAGATGCCTCTTTTGACGGCACTGCGAGAAAGGATTCTTGAACTTGCCAATAATTTTGAAGATTTTGTTTTAAAGCTTATACCTTCTAGTGATCTTGAGCAGCCACTGCATTTGGCCAAAGTAGCTATTGGACTTGTTACTTTCCCTGTAAATGATGAGAGATTGCTTAAGAACTGTTCTATTTGCTGTGATGACAAGCCAGTGCCAATTATGATTACCTTAAAATGTTCTCACACATTCTGTTCACATTGCTTGAGGGCCTATGCTGATGGTAAAGTACAATCTTGTCAAGTCCCTATAAGATGCCCTCAACCAGGATGCAAGTATTGCACATCTGTAACTGAGTGCAGGTCTTTTCTTCCATTCACCTCCTTTGAATCTCTGGAGAAATCCCTTTCTGAAGCAAATATTGGCTGTTCAGATAGAATTTATTGTCCATTTCCAAATTGCTCTGTTCTCCTTGATCCTCATGAATGTTCATCAGCAAGGGACTGTTCATCTAGTCAGTCTGACAACTCTTGTATCGAGTGTCCTGTTTGTCGGAGGTTTATCTGTGTGGATTGTAAGGTTCCTTGGCATTCTTCTATGAGTTGTGTAGAATACCAGAATCTGCCAGAGGAGAGGGATGCTTCTGACATTACCTTTCACCGTCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAGTGTCGTAGAACGATTGAGCTTACTCAAGGCTGCTACCACATGACATGCTGGTGTGGACATGAGTTTTGCTATTCATGTGGTGGGGAGTACCGAGAAGGGCAACAAACATGCCAGTGTGCATATTGGGATGAAGATAACTCTGATGACTCAGTGGCGCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACATTCAATTCTCTCTCCATGATTGTGGATGCATACTCGGACCAAGAACGATCGCAGCTTGCTCTTATTCAAAGGTTCCTAACTGGGGGTTTCAGTCTCAGTGACCATAATCCTTACCAATCTCCTCCTCGCAGTACAGAGTCCTATGTAGACCCCATGAAGGATCTACATCAACTTCCATGGCTAGAGAGGTTTGTGTCTGTGATAAGTGACAACTACTATGAGGATTACATTCAATGA 1536 0.4297 MGDQGVNVGREEEEDEFCSCCGDEDEEVWKETEEPVVEKGLKDELDEFSVKMFFKGLSMAGVENLSSGFSGIGVFMERSSGLPAIRVQKKLDFYAEESVVDYLALLDGLLEAVQKKIRRVFAFTDSELLHDQITFGKKLEMPLLTALRERILELANNFEDFVLKLIPSSDLEQPLHLAKVAIGLVTFPVNDERLLKNCSICCDDKPVPIMITLKCSHTFCSHCLRAYADGKVQSCQVPIRCPQPGCKYCTSVTECRSFLPFTSFESLEKSLSEANIGCSDRIYCPFPNCSVLLDPHECSSARDCSSSQSDNSCIECPVCRRFICVDCKVPWHSSMSCVEYQNLPEERDASDITFHRLAQNKRWKRCQQCRRTIELTQGCYHMTCWCGHEFCYSCGGEYREGQQTCQCAYWDEDNSDDSVAHSLQESEQWAWETFNSLSMIVDAYSDQERSQLALIQRFLTGGFSLSDHNPYQSPPRSTESYVDPMKDLHQLPWLERFVSVISDNYYEDYIQ* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0175 511 SUPERFAMILY Ribonuclease H-like 66 168 IPR012337 -
Gso9g0175 511 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Gso9g0175 511 SMART ibrneu5 265 337 IPR002867 -
Gso9g0175 511 SMART ibrneu5 346 405 IPR002867 -
Gso9g0175 511 ProSiteProfiles Zinc finger RING-type profile. 198 242 IPR001841 -
Gso9g0175 511 Gene3D - 335 459 - -
Gso9g0175 511 ProSiteProfiles TRIAD supradomain profile. 194 411 IPR044066 -
Gso9g0175 511 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 13 510 - -
Gso9g0175 511 SUPERFAMILY RING/U-box 196 269 - -
Gso9g0175 511 Pfam IBR domain, a half RING-finger domain 356 405 IPR002867 -
Gso9g0175 511 Pfam IBR domain, a half RING-finger domain 279 337 IPR002867 -
Gso9g0175 511 SUPERFAMILY RING/U-box 349 413 - -
Gso9g0175 511 Gene3D - 53 184 IPR036397 GO:0003676
Gso9g0175 511 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 13 510 IPR031127 GO:0004842|GO:0016567
Gso9g0175 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 279 IPR013083 -
Gso9g0175 511 Pfam Reverse transcriptase-like 65 167 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0175 Gso-Chr9 1562442 1567723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0175 22 396 C3H Transcription Factor Family AT2G19610 24.490 1.70e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0175 - - gmx:100784508 1044.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1061 15 10034140 10040113 Gso9g0175 9 1562442 1567723 GST