Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0170 ATGGAAGAGTCCTCTCTCTGCTGCGAACAATTGCCAGATGGGGAATGCATTGAGGTGGTTCAGAAAGACAAAGAAGACGATACACTGATTGAATTGGACTGTCAAAATGGTTTTCCTGAAGGAAGAAAGGAGTTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCGTACGACGACGCTTACAATTATTACATCTGTTATGCCAAGGAGGTGGGGTTTCGCGTGAGGGTGAAGAATTCGTGGTTCAAGCGGAACAGCCGGGAAAAATATGGTGCGGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATGAAGGTCGTTAATCATTTGAGGAAAGAGACGAGAACTGGTTGTCCCGCGATGATAAGGATGAGGTTGGTGGAGTCTCAGAGGTGGAGGGTGCTTGAGGTTACGCTTGAACATAACCACATGTTAGGTGCTAAGATACTCAGGTCGGTTAAGAAGATGGGAAATGGAACAAAGAGGAAGCCGTTGCCTTGCTCTGAAGCTGAGGGGCAGACGGTTAAGTTATATCGTGCACTTGTGATAGATGCTGGAGGTAATGGAAATTCAAACTGCGGTGCAATTGAGGACAGAACTTTCTCTGAGTCTTCTAATAAGTTGAACCTTAGAAAAGGTGACACACAGGCCATTTATAATTTCCTCTGCCGGATGCAGTTGACTATTCCAAACTTCTTTTACTTGATGGATTTCAATGATGATGGCCATTTGAGGAATGCATTCTGGGTTGATGCTAGGTCCAGGGCTTCTTGTGGTTACTTTGGCGATGTTATTTATTTTGACAACACTTATTTGTCAAACAAATTTGAAATCCCTCTCGTGACCTTTGTTGGAATAAATCACCATGGTCAATCAGTGTTATTAGGGTGTGGCCTGCTTGCAAGTGAAACTACAGAGTCTTATCTTTGGTTGTTAAGGACATGGCTTAAATGCATGTCAGGATGTTCTCCCCAAACTATTATTACTGATAGGTGCAAGGCTTTGCAGAGTGCAATTGTAGAGGTTTTTCCTAAATCTCATCATTGTTTTGGCTTGTCATTAATTATGAAAAAAGTACCTGAAAAATTAGGAGGGTTGCACAACTATGATGCAATCAGGAAAGCACTGATTAAAGCAGTTTATGAGACATTGAAAGTGATCGAGTTTGAAGCGGCATGGGGATTTATGATTCAACGTTTCGGAGTTAGTGATCACGAGTGGCTTCGTTCTCTATATGAAGATCGAGTTCGTTGGGCTCCAGTATATTTGAAGGACATATTTTTCGCTGGAATGTCTGCAGCTCGCCCTGGTGAGAGCATTAACCCTTTTTTTGATAGATATGTGCACAAACAGACTCCGCTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTTCACAAGAAGCACAAGGAAGAATCTTTTTCAGATATTGAATCAAGGAGCTCAAGCCCCTTGCTGAAAACCAGATGTTCCTTTGAATTGCAGCTCTCTAGAATGTACACAAGAGAAATGTTTATGAAATTCCAGTTAGAAGTGGAAGAGGTGTATTCTTGTTTTGGTACAACACAATTGCATGTGGATGGCCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACCGACGGGAGATTAGGGATTTTGAAGTTTTGTACAGTAGGACAGCTGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTATGTAGGCATGCATTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAAATACATTCTTTCACGATGGAAGAAAGATTACAAGCATCCTAATCACAGCTCTGGTGGTGCTAATGATACTGACTGCACTAATGATACCGACCGCATTCAATGGTCTAATCAGTTATTTAGAAGTGCCTTACAAGTTGTGGAGGAGGGGATACTTTCTCTAGACCATTACAATGTAGCGTTACAATCTTTAGAAGAATCACTGAGTAAGGTTCATGATGTAGAACAGAGACAGGAGTAA 2019 0.417 MEESSLCCEQLPDGECIEVVQKDKEDDTLIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRMKVVNHLRKETRTGCPAMIRMRLVESQRWRVLEVTLEHNHMLGAKILRSVKKMGNGTKRKPLPCSEAEGQTVKLYRALVIDAGGNGNSNCGAIEDRTFSESSNKLNLRKGDTQAIYNFLCRMQLTIPNFFYLMDFNDDGHLRNAFWVDARSRASCGYFGDVIYFDNTYLSNKFEIPLVTFVGINHHGQSVLLGCGLLASETTESYLWLLRTWLKCMSGCSPQTIITDRCKALQSAIVEVFPKSHHCFGLSLIMKKVPEKLGGLHNYDAIRKALIKAVYETLKVIEFEAAWGFMIQRFGVSDHEWLRSLYEDRVRWAPVYLKDIFFAGMSAARPGESINPFFDRYVHKQTPLKEFLDKYELALHKKHKEESFSDIESRSSSPLLKTRCSFELQLSRMYTREMFMKFQLEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTAGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHKYILSRWKKDYKHPNHSSGGANDTDCTNDTDRIQWSNQLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0170 672 Pfam SWIM zinc finger 540 583 IPR007527 GO:0008270
Gso9g0170 672 Pfam FAR1 DNA-binding domain 62 145 IPR004330 -
Gso9g0170 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 6 21 668 - -
Gso9g0170 672 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 21 668 IPR031052 GO:0006355
Gso9g0170 672 Pfam MULE transposase domain 264 358 IPR018289 -
Gso9g0170 672 ProSiteProfiles Zinc finger SWIM-type profile. 551 587 IPR007527 GO:0008270
Gso9g0170 672 SMART 26again6 562 589 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0170 Gso-Chr9 1486775 1489475 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso9g0170 MULE 1.6e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0170 - K17604 gmx:100814986 1379.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1055 15 9955449 9964110 Gso9g0170 9 1486775 1489475 GST