Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0118 ATGGCTGAGTCCGACAACGAGTCAGGAGGTCACACGGGGAACGCGAGCGGGAGCAACGAGTTGTCCGGTTGCAGGGAGCAAGACAGGTTCCTCCCAATAGCAAACGTGAGCAGGATCATGAAGAAGGCGTTGCCGGCGAACGCGAAGATATCGAAGGAGGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATAACAGGAGAGGCTTCCGATAAGTGCCAGAAGGAGAAGAGGAAGACGATCAACGGCGACGATCTTCTCTGGGCCATGACTACCCTGGGCTTCGAGGACTACGTGGATCCTCTCAAGATTTACCTGCACAAGTATAGGGAGATGGAGGGGGAGAAAACCGCTATGATGGGAAGGCCACATGAGAGGGATGAGGGTTATGGCCATGGCCATGGTCATGCAACTCCTATGATGACGATGATGATGGGGCATCAGCCCCAGCACCAGCACCAGCACCAGCACCAGGGACACGTGTATGGATCTGGATCAGCATCTTCTGCAAGAACTAGATAG 534 0.5506 MAESDNESGGHTGNASGSNELSGCREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVDPLKIYLHKYREMEGEKTAMMGRPHERDEGYGHGHGHATPMMTMMMGHQPQHQHQHQHQGHVYGSGSASSARTR* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0118 177 MobiDBLite consensus disorder prediction 1 24 - -
Gso9g0118 177 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso9g0118 177 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Gso9g0118 177 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Gso9g0118 177 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Gso9g0118 177 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 168 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso9g0118 177 Gene3D Histone, subunit A 19 165 IPR009072 GO:0046982
Gso9g0118 177 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Gso9g0118 177 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g0118 177 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 168 - -
Gso9g0118 177 MobiDBLite consensus disorder prediction 151 177 - -
Gso9g0118 177 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0118 Gso-Chr9 1030725 1031863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0118 1 155 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.697 5.49e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso9g0118 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0118 K08065 - gmx:100305641 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0999 15 9297280 9298572 Gso9g0118 9 1030725 1031863 GST
Gso7g2188 7 45615414 45620726 Gso9g0118 9 1030725 1031863 PCT