Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0108 ATGGCGTCCATGCCTTCGAAAAACATATGTATTCGGAGGCAACAATGCCCTTGTGGAGATTGGAAATGTTATATTACATATGAGGGTGATGCTGAGGAGGGTTCTGCAGCACCAGAATTGGTGAAGGCAGAGAAAGCCTCTTCTGGGGCTATGGTTACTCCCTATGTTGGAATGGTGTTTAAGAGTGATGATGATGCTTTTGAGTATTATGGCAATTTTGCTAGGAAGAATGGGTTCTCTATTAGGAAGGAAAGATCTAGAATTAGCCCTCAGTTGGGGATTTACAAGCGTGATTTTGTTTGTTACCGGTCTGGCTTTGCCCCCGTGAAGAAGAAGCCTAATGGAGAACACCATAGAGATAGGAAATCGGTCAGGTGTGGATGCGATGCAAAGATGTATCTCTCCAAGGAGGTTGTAGAAGGGGTTTCCCAGTGGTTTGTTGTGCAGTTTAGTAATGTGCACAATCATGAACTTCTGGAAGATGATCAAGTGCGGCTTTTGCCCGCGTATCGTAAGATTCATGAGGCTGATCAAGAGCGTATACTCTTGCTTTCCAAAGCAGGGTTTCCGATACATCGGATAGTGAAAATGCTTGAGCTGGAGAAGGGGATTCAAGGGGGGCAACTGCCTTTCTTGGAAAGGGATGTGAGGAACTTTGTTCAAAACCGCAAGAAGGTTGTTCAAGAGAACGAGGCATTGCTCAGTGAGAAGAGAGAAAATGATGTATTGGAACTTCTTGAGGCGTGCAAAGCCATGAAAGAAGCAGATGATGACTTTGTTTATGATTTTACTGTGGATGCGAATGATAAGGTTGAAAATGTAGCTTGGTCGTATAGTGACTCGGTTAATGCAAATGCTATGTTTGGTGATGTGGTTTATTTTGACTCTTCTCATCGATCGGTCACTTATGGATTGCTTTTTGGAGTATGGTTTGGTATTGATAGCTACGGTAGAACCATTTTTTTTGGCTGTGTTTTATTGCAGGATGAAACGCCCCAATCCTTCTCATGGGCATTACAGACTTTTGTCCGGTTCATGAGAGGGAGATGTCCACAAACTATTCTAACTGATCTAGACCCAGGGCTTAGAGATGCCATTAGAAGTGAATTTCCAGGAACTAAACATGTCATTCCTCATTGGAATATTCTATACAAGGTACCCTGTTGGTTTTCTCCTCCTCTGGGTTCCCGGTATACAGAATTTAAATCTGAGTTTGATGCCTTATTTCACATTGAGAATACAGAAGAATTTGAACATCAGTGGAGACAGATGATTTCTCTGTTTGAACTTGGTTCAGACAAACATACTGATTTATTATATTCTGTTCGAGCATCTTGGGCACAAGCCTATGTAAGAGGTTACTTTCTGGCTCAAATGGCAACAATAGCCTACTCAAAGTCTATAGATGCATTTTTGAAAGGGATCTTCACTGCACATACGTGTTTGCGTAGCTTTTTTGAGCAGGTTGGCATTTCTGCAAGTTTTCAACATCAAGCACACCAGGAGACTCAATATATACATCTCAAAACTTGCATACCAATTGAAGAGCATGCACGAAGCATTCTCACACCTTTTGCTTTTAATGCCTTGCAGCAAGAGTTATTGCTGGCAATGCAATACGCTGCGTCCGAAATGGCCAACGGATCATATATTGTCCGGCACTTCAAAAGCATGGATGGAGAATGGCTTGTAATCTGGTTGGCAGAAGATGATCAGATACATTGCTCTTGCAAGGAATTTGAATCATCAGGAATACTATGCAGGCATGCTCTTCGTGTACTTGTAATAAAGAATTACTTTCAGCTGCCTGATAAATACTTTTTAGGTAGATGGAGACGGGAATGCTCATTACTTGTTGATGATGATCAAAATAATCTGGGTATTGGTGAGGAATGGTTTCAAGAATATCAGTCCCTCGCTGAAACTTTATTTCAAGAATCATCAATTACAAAGGAGCGATCTGACTATGTTCGGAAAGAACTGACAAAAGAACTTACTAGGCTTCTTAATGAGGTTAGAAATCTCCCTGAGGCTGATGGAGTCTGCATGAACACGTCTGTTTCACCAGCCAACTAG 2076 0.4176 MASMPSKNICIRRQQCPCGDWKCYITYEGDAEEGSAAPELVKAEKASSGAMVTPYVGMVFKSDDDAFEYYGNFARKNGFSIRKERSRISPQLGIYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVVEGVSQWFVVQFSNVHNHELLEDDQVRLLPAYRKIHEADQERILLLSKAGFPIHRIVKMLELEKGIQGGQLPFLERDVRNFVQNRKKVVQENEALLSEKRENDVLELLEACKAMKEADDDFVYDFTVDANDKVENVAWSYSDSVNANAMFGDVVYFDSSHRSVTYGLLFGVWFGIDSYGRTIFFGCVLLQDETPQSFSWALQTFVRFMRGRCPQTILTDLDPGLRDAIRSEFPGTKHVIPHWNILYKVPCWFSPPLGSRYTEFKSEFDALFHIENTEEFEHQWRQMISLFELGSDKHTDLLYSVRASWAQAYVRGYFLAQMATIAYSKSIDAFLKGIFTAHTCLRSFFEQVGISASFQHQAHQETQYIHLKTCIPIEEHARSILTPFAFNALQQELLLAMQYAASEMANGSYIVRHFKSMDGEWLVIWLAEDDQIHCSCKEFESSGILCRHALRVLVIKNYFQLPDKYFLGRWRRECSLLVDDDQNNLGIGEEWFQEYQSLAETLFQESSITKERSDYVRKELTKELTRLLNEVRNLPEADGVCMNTSVSPAN* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0108 691 ProSiteProfiles Zinc finger SWIM-type profile. 563 598 IPR007527 GO:0008270
Gso9g0108 691 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 680 IPR031052 GO:0006355
Gso9g0108 691 Pfam MULE transposase domain 291 383 IPR018289 -
Gso9g0108 691 SMART 26again6 573 600 IPR006564 GO:0008270
Gso9g0108 691 PANTHER FAR1-RELATED SEQUENCE 10 ISOFORM 1 27 680 - -
Gso9g0108 691 Pfam FAR1 DNA-binding domain 68 159 IPR004330 -
Gso9g0108 691 Coils Coil 658 678 - -
Gso9g0108 691 Pfam SWIM zinc finger 571 594 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0108 Gso-Chr9 955152 958103 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso9g0108 MULE 9.2e-15 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0108 - - gmx:100817107 1419.06