Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0104 ATGGGTCGCTCTCGTGGGAATTTCCACCACGCCGATGAGGACCCCAACCAGAGGTCAAGGAGAAAAAAGAATGCTGCCAGTGGAGAGAATTCGGAGTCTGGAGCTGCAGGCCAAGGAGCAGGCGAAGGGAAAAAGGCTCTGTACCACTGCAATTATTGTAATAAGGATATAACAGGAAAAATCCGTATTAAGTGTGCCATGTGCCCAGATTTTGACTTGTGTATAGAGTGCTTTTCTGTTGGAGCTGAGGTGACACCTCATAAAAGCAACCACCCTTACAGGGTTATGGATAATTTGTCTTTCCCTCTTATTTGCCCAGACTGGAATGCAGATGATGAAATTTTGCTTCTAGAGGGAATTGAAATGTATGGCTTGGGAAACTGGACAGAAGTTGCCGAGCATGTTGGAACCAAAAACAAAGAGTCATGCATAGAACACTATAGGAATGTATACCTGAATTCCCCGTTCTTTCCTGTTCCGGATATGTCTCATGTTGTTGGGAAAAACAGAAAAGAACTTCTTGCCATGGCGAAAGGGCAGGGTGAAGACAAGAAAGGAATTTCCATGGCGGATCTTAGTATAAAGGCAGAATCTTCCTTTTCTCCATCTAGAGTCAAGGTTGAAGATTCGCATAAAGCTGGCTCTGCTAATCGTTTGGCATCCAGTTTGAATTCAGAGTCGGATGGCCCCTCGGGTAACACACATGCTGCAAACCAAAAGGCATCTAATGTGGGCCGTGGAAAAGGTGGTCCAGGAATCATTAAAATGGAAGATTCTCAACTAGACAGAGATTTTGGAGGAAAAAAGCCTACTTCCTCTGGAAATGAAGGTCCTTCTTTAGTAGAATCGAGTGGTTATAACGCCAAAAGACAGGAATTTGATCCTGAATATGATAATGACGCTGAACAACTACTTGCTGAAATGGAATTTAAGGACACTGACACTGATGATGAGCGAGAGCTGAAACTACGGGTGTTGCGTTTCTATGCAAAAAGGCTTGATGAAAGAAAGCGAAGGAAGGATTTCATACTTGAAAGAAATTTGTTATACCCAAATCCATTTGAGAAGGATTTTACACCTGAGGAGAAGGCAATATGTCGGAATTATGACTTATTCATGCGCTTTCATACTAAGGAGGAGCATGAGGAATTGCTTAGAACCGTTATCTCTGAACATAGAACTCGTAAAAGACTTCAAGACCTTAAGGAAGCCCGGGCTGCTGGTTGCCGCAATTCAGCTGAAGCTGATAGATATCTGGCACAAAAGAGAAAAAGGGAAGCTGAAGAAAGTGCTCGTAGGACAAAAGAAAGTGCTCAGGGTGGCCCAAGCAATCTAGGGGTTTCTAATGCATTGATGTCTCCAGACTCTGCTGGCAAGGATTTGAGAGGAAGACCTGCAGGGCCTGCTACTTCTAGTTCTGTCAATGAAATGGACGTGACAGGATACTATGGGGCAGATTTACTTTCTGAATCGGAGAAACGTTTATGCTGTGAGCTAAGGTTGCCTCCAGCCATGTATCTAAAGATGCAAGAGCAGCTGTCTCTACAAATACTTGCTGGCACTGTCACTGCAAAATCTGATGCTCATCAATTGTTCAAGATGGATGCCATGAAAATTGACAGGGTGTATGATATTCTCATTAAAAAGGGGATTGGTTCCCCCTGA 1665 0.4366 MGRSRGNFHHADEDPNQRSRRKKNAASGENSESGAAGQGAGEGKKALYHCNYCNKDITGKIRIKCAMCPDFDLCIECFSVGAEVTPHKSNHPYRVMDNLSFPLICPDWNADDEILLLEGIEMYGLGNWTEVAEHVGTKNKESCIEHYRNVYLNSPFFPVPDMSHVVGKNRKELLAMAKGQGEDKKGISMADLSIKAESSFSPSRVKVEDSHKAGSANRLASSLNSESDGPSGNTHAANQKASNVGRGKGGPGIIKMEDSQLDRDFGGKKPTSSGNEGPSLVESSGYNAKRQEFDPEYDNDAEQLLAEMEFKDTDTDDERELKLRVLRFYAKRLDERKRRKDFILERNLLYPNPFEKDFTPEEKAICRNYDLFMRFHTKEEHEELLRTVISEHRTRKRLQDLKEARAAGCRNSAEADRYLAQKRKREAEESARRTKESAQGGPSNLGVSNALMSPDSAGKDLRGRPAGPATSSSVNEMDVTGYYGADLLSESEKRLCCELRLPPAMYLKMQEQLSLQILAGTVTAKSDAHQLFKMDAMKIDRVYDILIKKGIGSP* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0104 554 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Gso9g0104 554 MobiDBLite consensus disorder prediction 436 451 - -
Gso9g0104 554 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Gso9g0104 554 MobiDBLite consensus disorder prediction 1 42 - -
Gso9g0104 554 PIRSF Txn_adaptor_ADA2 35 554 IPR016827 GO:0003713|GO:0006357|GO:0035065
Gso9g0104 554 Gene3D - 469 552 IPR036388 -
Gso9g0104 554 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Gso9g0104 554 SMART zz_5 44 89 IPR000433 GO:0008270
Gso9g0104 554 MobiDBLite consensus disorder prediction 215 241 - -
Gso9g0104 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 155 IPR017930 -
Gso9g0104 554 MobiDBLite consensus disorder prediction 421 435 - -
Gso9g0104 554 MobiDBLite consensus disorder prediction 1 27 - -
Gso9g0104 554 MobiDBLite consensus disorder prediction 421 475 - -
Gso9g0104 554 ProSiteProfiles SWIRM domain profile. 468 554 IPR007526 GO:0005515
Gso9g0104 554 SUPERFAMILY Homeodomain-like 463 551 IPR009057 -
Gso9g0104 554 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Gso9g0104 554 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Gso9g0104 554 MobiDBLite consensus disorder prediction 200 284 - -
Gso9g0104 554 Gene3D - 41 96 IPR043145 -
Gso9g0104 554 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 553 IPR034318 GO:0003713|GO:0006357|GO:0035065
Gso9g0104 554 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Gso9g0104 554 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 553 - -
Gso9g0104 554 SUPERFAMILY RING/U-box 48 110 - -
Gso9g0104 554 CDD ZZ_ADA2 48 96 IPR041983 -
Gso9g0104 554 SMART sant 104 153 IPR001005 -
Gso9g0104 554 CDD SANT 108 150 IPR001005 -
Gso9g0104 554 Pfam Zinc finger, ZZ type 46 88 IPR000433 GO:0008270
Gso9g0104 554 Gene3D - 102 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0104 Gso-Chr9 926277 932245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0104 1 552 EF-hand Containing Proteins AT3G07740 47.487 8.22e-166 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso9g0104 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0104 K11314 - gmx:100815514 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0984 15 9169659 9175766 Gso9g0104 9 926277 932245 GST