Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0093 ATGGTTTCGCTGGAGGAATCTCGCTCTAATTCGAGCCGTTTCCCCTTGGCGAGGAGTTACCAGTACCACTCCTCGGTTTCGTCCAAAACGCAGCGTCACATCGGAAGGTCCATGCGCACGATACGCTCCAGTTTCTTCCAGGACGACAACAGCAGCAGCTGCTGCTCCTTCACCGAGAAATCCACGTGTCTCTCGGAGAACCTCACCGACTCCGTCGTCGACCTCCGTCTCGGCGAGCTCGCGCTTCGGAACAGCAAATCGGTGAAATCCTCTCCGGCTGAGGAGGACCTCCTCGATTTGTCGCAGGCCTTCAGCGACTTCTCCGCCTGCAGCAGCGACATCTCCGGCGAGCTACAGCGCCTCGCGACGCTGCCGTCGCCGAAGAAGAGCGACGTCTCCGGCGATAATGAGGCGCCGGAGCTGGAGATTGAGCCCTGCATGGGGTTCCTGCAGAGGGAGAACTTCTCCACGGAGATTATCGAGAGCATTTCGCCGGAGGATCTCCAGCCGACGGTGAAAATGTGCATCGACGGCCTCCAGTCGCAGTCGGTAGCGGTGAAGCGCTCCGCGGCGGCGAAACTCCGGCTACTAGCCAAAAACCGCGCCGACAATCGCGTTCTGATCGCGGAGTCGGGCGCCGTCCCCGTCCTCGTTCCGCTTCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCTGTCACCGCACTGTTAAACCTCTCTCTCCACGAGGACAACAAAATGCTGATAACCAATGCCGGAGCAGTTAAGTCTCTGATTTATGTTCTAAAAACCGGAACTGAAACTTCGAAGCAGAACGCGGCCTGTGCGCTCTTAAGCCTTGCATTGGTGGAAGAGAACAAGGGCTCGATCGGGGCTTCCGGTGCGATACCGCCGCTGGTTTCTTTGCTTCTGAACGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTTTATAAGCTGTGTTCTGTTAGGCAGAACAAGGAGAGAGCGGTGAGTGCCGGCGCAGTGAAGCCGCTGGTGGAGCTCGTGGCGGAACAGGGGAACGGCATGGCGGAGAAGGCCATGGTGGTGCTGAACAGCCTGGCGGGGATTCAGGAAGGGAAGGACGCGATTGTGGAAGAAGGCGGAATTGCTGCTCTTGTGGAAGCTATTGAGGATGGGTCTGTGAAAGGGAAGGAATTCGCGGTTTTGACCCTTCTTCAGCTCTGTGTTGATAGTGTCATAAACAGAGGGTTTCTTGTTAGAGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGACTGGGAGTGCTCGAGCTAAGCACAAGGCTGAAACGCTTCTTCGATATTTGAGGGAACCAAGACAAGAGGCAGCATCTACTTCAAGTTCTTAG 1377 0.5694 MVSLEESRSNSSRFPLARSYQYHSSVSSKTQRHIGRSMRTIRSSFFQDDNSSSCCSFTEKSTCLSENLTDSVVDLRLGELALRNSKSVKSSPAEEDLLDLSQAFSDFSACSSDISGELQRLATLPSPKKSDVSGDNEAPELEIEPCMGFLQRENFSTEIIESISPEDLQPTVKMCIDGLQSQSVAVKRSAAAKLRLLAKNRADNRVLIAESGAVPVLVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAVKSLIYVLKTGTETSKQNAACALLSLALVEENKGSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVKPLVELVAEQGNGMAEKAMVVLNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVINRGFLVREGGIPPLVALSQTGSARAKHKAETLLRYLREPRQEAASTSSS* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0093 458 PANTHER U BOX DOMAIN-CONTAINING 6 454 - -
Gso9g0093 458 Gene3D - 151 313 IPR011989 -
Gso9g0093 458 Gene3D - 314 458 IPR011989 -
Gso9g0093 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 212 254 IPR000225 GO:0005515
Gso9g0093 458 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 6 454 - -
Gso9g0093 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Gso9g0093 458 SUPERFAMILY ARM repeat 167 445 IPR016024 -
Gso9g0093 458 Pfam Armadillo/beta-catenin-like repeat 285 323 IPR000225 GO:0005515
Gso9g0093 458 Pfam Armadillo/beta-catenin-like repeat 203 240 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 324 364 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 365 405 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 406 447 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 242 282 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 283 323 IPR000225 GO:0005515
Gso9g0093 458 SMART arm_5 201 241 IPR000225 GO:0005515
Gso9g0093 458 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0093 Gso-Chr9 848013 850684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0093 111 450 U-box Gene Family AT2G23140 45.170 5.40e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0093 - - gmx:100806768 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0976 15 9090353 9093423 Gso9g0093 9 848013 850684 GST
Gso7g2259 7 46201769 46203872 Gso9g0093 9 848013 850684 PCT
Gso17g0062 17 653906 656884 Gso9g0093 9 848013 850684 PCT