Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0065 ATGAGTCAACTCGGCGCCGTGTTGCGGACTCAGAGGGAGCCCAGGAGGAGTACCATTCTGGGTTTGTTGACGGAGCAAATGGACGGCGTTGATAGTGGGACCCGCAGGAGGCGCAGCTTCAAGGAGCGCTTCGGATTCATCGGCATGGGGTGCTGTGGGGCCACCTGGGGCTTCCGTTCCGACGCGCTAAGTGTCACCCAAGGAGAACAGCAACAGCAGGAAACGGATCCAGAGTGCGTGGGTCCAGCAGGTTTGGGTTCGGGTATGAATCTCGCGGCGGCGTTAGCGGCGGAGAGGCAGCTCCGGGGGCCGCAGGAGGAGGCAGTGAGAGCGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGACCGAGGCGGAGAAGGAGAAGGAGAAAGAGAAAGAGGAGAATGTTGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCAGCGTTCATCCCATGTGGACACACTTTTTGCAGGGTGTGTTCCAGGGAACTGTGGCTTAATCGAGGCTCTTGTCCCCTTTGCAATCGCTCCATCCTCGAGATTCTCGACATTTTCTAG 591 0.5939 MSQLGAVLRTQREPRRSTILGLLTEQMDGVDSGTRRRRSFKERFGFIGMGCCGATWGFRSDALSVTQGEQQQQETDPECVGPAGLGSGMNLAAALAAERQLRGPQEEAVRAPGTPWRVSLMRLLEETEAEKEKEKEKEENVVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0065 196 CDD RING-HC 148 185 - -
Gso9g0065 196 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Gso9g0065 196 Coils Coil 117 144 - -
Gso9g0065 196 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 196 - -
Gso9g0065 196 SUPERFAMILY RING/U-box 136 193 - -
Gso9g0065 196 SMART ring_2 148 185 IPR001841 -
Gso9g0065 196 PANTHER OS01G0917900 PROTEIN 17 196 - -
Gso9g0065 196 Pfam Zinc finger, C3HC4 type (RING finger) 145 190 - -
Gso9g0065 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0065 Gso-Chr9 607224 608453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0065 19 196 C3H Transcription Factor Family AT4G22250 56.701 9.47e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0065 - - gmx:100804292 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0948 15 8835833 8836777 Gso9g0065 9 607224 608453 GST
Gso7g2240 7 46035888 46037085 Gso9g0065 9 607224 608453 PCT
Gso17g0081 17 786404 787532 Gso9g0065 9 607224 608453 PCT