Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0058 ATGGAGGGTGGTAGTAGTAGCTCTAATGGCACTTCTTATCTGTTGGCTTTTGGAGAAAACAACAGTGGTGGGCTATGCCCAATGACGATGATGCCTTTGGTGACTTCCCATCACGCTGGTCATCATCCAATAAATCCTAGTAATAATAATAATGTAAACACAAACTGTCTCTTCATTCCCAACTGCAGTAACAGTACTGGAACTCCTTCTATCATGCTCCACAATAATCACAACAACAACAAAACTGATGATGATGATAACAACAACAACACTGGGTTAGGGTACTATTTCATGGAGAGTGACCACCACCACCATCACCACGGCAACAACAACAACAATGGAAGCTCCTCCTCCTCCTCCTCTTCTGCTGTCAAGGCCAAGATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAATTGTCAGAAGGTTGGGGCCCCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCTTCTGCAGCGACAATGGCTGGTGGTGATGCAGCAGCTGGATCAAGCTGCATAGGTGAAGATCCAGCTTTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTCACAAAGTATGAGCAAGAACTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACAATTTCTTCCTCCGACTTTGCTAGCAATGAGGGTGGTGATAGGAATGGATCGTCTGAAGAGGATGTTGATCTACACAACATGATAGATCCCCAGGCAGAGGACAGGGATTTAAAGGGTCAGCTTTTGCGCAAGTATAGCGGATACTTGGGCAGTCTGAAGCAAGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAACAGACATTACAAATGGCCTTACCCATCCGAATCCCAGAAGCTGGCTCTTGCAGAGTCGACAGGTCTGGATCAGAAGCAAATCAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCAAGCCATCCACACTATTACATGGATAATGTTCTAGGCAATCCATTTCCCATGGATCTTTCCCATCCCATGCTCTAG 1140 0.457 MEGGSSSSNGTSYLLAFGENNSGGLCPMTMMPLVTSHHAGHHPINPSNNNNVNTNCLFIPNCSNSTGTPSIMLHNNHNNNKTDDDDNNNNTGLGYYFMESDHHHHHHGNNNNNGSSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFASNEGGDRNGSSEEDVDLHNMIDPQAEDRDLKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWNRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSHPHYYMDNVLGNPFPMDLSHPML* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0058 379 SMART ELK_2 261 282 IPR005539 GO:0003677
Gso9g0058 379 MobiDBLite consensus disorder prediction 75 125 - -
Gso9g0058 379 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Gso9g0058 379 SUPERFAMILY Homeodomain-like 283 359 IPR009057 -
Gso9g0058 379 MobiDBLite consensus disorder prediction 110 125 - -
Gso9g0058 379 Pfam ELK domain 261 282 IPR005539 GO:0003677
Gso9g0058 379 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Gso9g0058 379 Pfam KNOX2 domain 178 225 IPR005541 GO:0003677|GO:0005634
Gso9g0058 379 ProSitePatterns 'Homeobox' domain signature. 319 342 IPR017970 GO:0000981|GO:0006355
Gso9g0058 379 SMART KNOX2_2 175 226 IPR005541 GO:0003677|GO:0005634
Gso9g0058 379 PANTHER - 1 368 - -
Gso9g0058 379 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Gso9g0058 379 Pfam KNOX1 domain 123 162 IPR005540 GO:0003677|GO:0005634
Gso9g0058 379 CDD homeodomain 293 345 IPR001356 GO:0003677
Gso9g0058 379 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 368 - -
Gso9g0058 379 SMART KNOX1_2 122 166 IPR005540 GO:0003677|GO:0005634
Gso9g0058 379 SMART HOX_1 283 348 IPR001356 GO:0003677
Gso9g0058 379 Gene3D - 279 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0058 Gso-Chr9 514864 522613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0058 95 379 Homeobox Transcription Factor Family AT1G62360 77.133 1.03e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso9g0058 KNOX2 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0058 - - gmx:547796 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0941 15 8741234 8748798 Gso9g0058 9 514864 522613 GST
Gso7g2236 7 45988494 45993986 Gso9g0058 9 514864 522613 PCT