Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0044 ATGGACAAAGGATGGGTTTCCTCTCAATCTCTTCTTCCTCCCACACCCGACAATACTATGTTTCCTCTCCTCGGATTCCCCGTCAAACTCAGCCGCCCCACCATGGAACTCCACCATGATAACCGCAAACTTGTCGCTGAAGTCGACTTCTTCTCTCATACTCCGCCACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTGGATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCGAGCTTGCACAGTTGCAAGTGGAGCTTCAACGCATGAACGCTGAGAACAAGAAGCTGAAAGAGATGCTCAGCCATGTCACCGGTAACTACACCGCCTTGCAGATGCATCTTGTGACACTAATGCAACAGAACCAGCAGCGAACAGAAAGCACGGAAAATGGGGTTGCTCAGGGAAAGGTTGAGGATAAAAACCATGGTGTTGGTGGAGGAAAGGTACCAAGGCAATTCCTTGATATAGGTCCCAGTGGCACAGCAGAAGTAGATGATCAAGTATCTGATTCTTCTTCTGATGAAAGAACACGATCGAGCACGCCTCAGGACAATAACACTGAAGCTGGAACAAGAGATGGAGCGAGAAATAACAATGGTAATAAAAGCGAGTTGGGTAGGGAAGAGAGTCCAGACTCAGAATCACAAGGTTGGGGTCCCAATAAGCTTCAGAAAGTGAACCCTTCCAATCCTATGGATCAATCCACTGCAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATTAGTGATGGGTGCCAATGGAGAAAATATGGACAAAAAATGGCTAAGGGGAATCCATGCCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCTGATGATAGAACAATTTTGGTGACAACATATGAAGGCACACATAACCATCCACTGCCACCTGCTGCTATGGCCATGGCATCAACCACTGCAGCTGCTGCTACCATGTTGCTGTCTGGATCAATGTCCAGTGCAGATGGAGTAATGAACCCCAATTTGCTAGCCAGAGCAATTCTTCCTTGCTCTACAAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCCACTGTGACTTTGGACCTCACACACAACCCAAACCCATTGCAATTTCAAAGGCCTGGTGCCCCATTCCAAGTACCCTTCCTCCAAGCACAGCCTCAGAATTTTGGGTCCGGAGCCACCCCAATTGCACAAGCACTTTATAATCAATCAAAATTCTCTGGTCTTCAGTTGTCTCAGGATGTAGGATCTTCTCAATTAGCACCACAAGCTCCTAGACCACCCTTGCAGCCAAGCCAACATCCCTCACTGGCTGACACGGTCAGCGCCGCCGCCTCTGCCATCACTTCCGATCCAAACTTCACCGCCGTGCTCGCTGCCGCCATCTCCTCCATCATTGGGGGAGCTCACAATTCAAACAACAACAACAATAACAACAGCAACAACAACACGAGCAGGACTACTATTAGCAGCTTTTCAGGAAACTGA 1626 0.4846 MDKGWVSSQSLLPPTPDNTMFPLLGFPVKLSRPTMELHHDNRKLVAEVDFFSHTPPPNIVKKELDQTPLHINTGLQLLTANTRSDQSTVDDGLSSDAEDKRAKTTELAQLQVELQRMNAENKKLKEMLSHVTGNYTALQMHLVTLMQQNQQRTESTENGVAQGKVEDKNHGVGGGKVPRQFLDIGPSGTAEVDDQVSDSSSDERTRSSTPQDNNTEAGTRDGARNNNGNKSELGREESPDSESQGWGPNKLQKVNPSNPMDQSTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCADDRTILVTTYEGTHNHPLPPAAMAMASTTAAAATMLLSGSMSSADGVMNPNLLARAILPCSTSMATLSASAPFPTVTLDLTHNPNPLQFQRPGAPFQVPFLQAQPQNFGSGATPIAQALYNQSKFSGLQLSQDVGSSQLAPQAPRPPLQPSQHPSLADTVSAAASAITSDPNFTAVLAAAISSIIGGAHNSNNNNNNNSNNNTSRTTISSFSGN* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0044 541 Coils Coil 100 134 - -
Gso9g0044 541 SUPERFAMILY WRKY DNA-binding domain 278 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0044 541 Gene3D WRKY domain 270 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso9g0044 541 ProSiteProfiles WRKY domain profile. 280 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0044 541 MobiDBLite consensus disorder prediction 82 102 - -
Gso9g0044 541 PANTHER WRKY TRANSCRIPTION FACTOR 6 34 525 - -
Gso9g0044 541 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 34 525 IPR044810 GO:0003700
Gso9g0044 541 Pfam WRKY DNA -binding domain 287 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0044 541 MobiDBLite consensus disorder prediction 461 483 - -
Gso9g0044 541 MobiDBLite consensus disorder prediction 148 279 - -
Gso9g0044 541 MobiDBLite consensus disorder prediction 202 229 - -
Gso9g0044 541 SMART WRKY_cls 285 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso9g0044 541 MobiDBLite consensus disorder prediction 518 541 - -
Gso9g0044 541 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0044 Gso-Chr9 417828 420307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0044 40 524 WRKY Transcription Factor Family AT1G62300 55.449 1.51e-153 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso9g0044 WRKY 5.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0044 - - gmx:100127376 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0925 15 8623499 8626084 Gso9g0044 9 417828 420307 GST