Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0042 ATGGATTGGACTAGAGGCCACACCCTCGGCCGCGGCTCCACCGCGGCCGTCTACATCGGGGAGTCCCACCGGTCCGGTGAAGTGTTTGCCGTGAAGTCTGCGGAGCTCCACCGGTCGGAGTTCCTCAAAAGGGAGGAGAGGATTCTTTCAACACTGAAATGTCCTCAAATTGTGGCCTACCGAGGCTGTGACAACACGTTCGAGAACGGCGTGCAGTGGTTCAACATGTTCATGGAGTACGCGCCTCACGGGACCCTGGCGGAGCGCGGTGGCGGGATGGAAGAAGCGGTGGTGGGGTCCTGCACGCGCCAAATTCTGCAGGGCCTGAACTACCTTCACTCCAATGGGATAGTGCATTGCGACGTGAAGGGGCAGAACGTGTTGGTGACGGAGCAAGGGGTGAAAATTGCGGACTTTGGTTGCGCTCGGAGGGTGGAGGAGTCATCGTCGGTGATCGCCGGCACGCCGAGATTCATGGCACCAGAGGTGGCGCGTGGGGAGCAGCAGGGGTTCCCTGCTGACGTGTGGGCACTTGGGTGCACTGTGCTGGAGATGATCACCGGGACGCCGCCGTGGCAAGGCGGCGGAGACCCGGCGGCGGTGGTTTATAGGATTGGATTCTCCGGCGAGTCGCCGGAGATACCTGGTTATGTGTCGGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGAGCCCGGTGAAAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAGTGCACGGAATTGAAGTTGTTGGTGTTGGATTCGGACACTCCCACTGGTGTGTTGGAACGAGGTTTTTGGGATTCACTGGAGACAGCTCAGCATGAAGCACTTGATTGTCCCTCTCCTAGGGACAGAATTCGTAGGTTGTTTTCGGATGAGCCTGTTTGGGCATCGAACGATGGCGAATGGGTCACTGTGAGAGGCAATGAGATCCATGACATACATTTGGAGGCTGAGGGTTTGTTCTTTCACCAAACCAACACTACTTTTTGTAATGTCGTTAGTGATGAAGACAATGTTTTGGTAACTTTTTGTGATCCTGAAATTGTAGAATCAACTGCAGCTGAATTGAGTATTAGTGATAATGATTGTTATCTTAGAGGCAGAAACTGTGATTGTCGCACCAGAGAATCATTGTTGTCAGCTTGTGTATGTCTAGTGATTGTTTTCCATGGAAAATTTGATTCTAATAAGATGAGATTTTTTATCATGCCTTGCATTTTGCTCCCCTTTCACTCTCTTTAA 1269 0.5264 MDWTRGHTLGRGSTAAVYIGESHRSGEVFAVKSAELHRSEFLKREERILSTLKCPQIVAYRGCDNTFENGVQWFNMFMEYAPHGTLAERGGGMEEAVVGSCTRQILQGLNYLHSNGIVHCDVKGQNVLVTEQGVKIADFGCARRVEESSSVIAGTPRFMAPEVARGEQQGFPADVWALGCTVLEMITGTPPWQGGGDPAAVVYRIGFSGESPEIPGYVSEQGRDFLGKCLKREPGERWSVEELLGHGFVKECTELKLLVLDSDTPTGVLERGFWDSLETAQHEALDCPSPRDRIRRLFSDEPVWASNDGEWVTVRGNEIHDIHLEAEGLFFHQTNTTFCNVVSDEDNVLVTFCDPEIVESTAAELSISDNDCYLRGRNCDCRTRESLLSACVCLVIVFHGKFDSNKMRFFIMPCILLPFHSL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0042 422 ProSiteProfiles Protein kinase domain profile. 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0042 422 PANTHER MAP KINASE KINASE KINASE 1 342 - -
Gso9g0042 422 Pfam Protein kinase domain 4 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0042 422 SMART serkin_6 3 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso9g0042 422 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 342 - -
Gso9g0042 422 Gene3D Transferase(Phosphotransferase) domain 1 2 282 - -
Gso9g0042 422 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gso9g0042 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Gso9g0042 422 SUPERFAMILY Protein kinase-like (PK-like) 2 283 IPR011009 -
Gso9g0042 422 CDD STKc_MAPKKK 2 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0042 Gso-Chr9 402229 403607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0042 1 277 MAP Kinase Kinase Kinase AT2G32510 52.759 2.02e-104 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso9g0042 Pkinase 1.6e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0042 K20716 - gmx:100802174 877.47