Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0021 ATGAATGACATTACTGCTTATAGACAGGATCCCTCTTTAAATGCTGGTCGTCCAAAAGGGGCCATACATGGATGTCCAAACTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCTAGGGATGCCATAAGAGGAGTTTTGGAAGAAGCTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAAAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTTGCTGGAAATCACCATGCTCTCTTGAGAAAAAGAACTTATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCAGAATGCACAAGAAACTACGGCTAGTGCTCGTGGAAATACAAAAACCAAGAGAAAAGGAGATGTAAAAGTAGCTTTAGACTCTCAGCTTGGAATAGAAACACCAGCATTCCAAATACCCAGAATGTTGAAAAATGTGACTGTCAGTCTGAACCTGTGGGAACCATCTGTGAAGAATATTGAGGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATCAAAGTGCTTCGTATTAACACTTTGGAGGCTGGAGTTTTTAGCAGTGGATTTTCCACACTTTCTGATCCTGTGGAGGCATGCACTTACCCTGAATATTTGAAATCTGGATGGAACATGAATAATATACTTTCACTGTCAGGTTCCCTTCTTTGTTTTGAAAGCTCTGAAGCTTCACGTAATTTTGCCCCCAAGATTCACGTGGGAATGTGCTTTTCTCCACTCAACTGGAAAGTTGAAGAGCACCACTTATACTCATTATCTTATATGCATTTGGGTGAACCAAAAGTGTGGTATGGAATCCCAGGAAGATTTGCTGCTAACTTTGAAACAATTTGGAAGAAGTATCTCCCAGATTTGCATGCAGGATAG 948 0.4082 MNDITAYRQDPSLNAGRPKGAIHGCPNCSNCVKVTARWHPRDAIRGVLEEAPIFHPTEEEFKDTLKYIASIRSKAEPYGICRIVPPTCWKSPCSLEKKNLWEKSEFVAQIQRIDGHQVQNAQETTASARGNTKTKRKGDVKVALDSQLGIETPAFQIPRMLKNVTVSLNLWEPSVKNIEGEYGRIVQNPTEEIKVLRINTLEAGVFSSGFSTLSDPVEACTYPEYLKSGWNMNNILSLSGSLLCFESSEASRNFAPKIHVGMCFSPLNWKVEEHHLYSLSYMHLGEPKVWYGIPGRFAANFETIWKKYLPDLHAG* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0021 315 ProSiteProfiles JmjN domain profile. 51 92 IPR003349 -
Gso9g0021 315 Gene3D Cupin 36 315 - -
Gso9g0021 315 PANTHER LYSINE-SPECIFIC DEMETHYLASE 14 140 - -
Gso9g0021 315 PANTHER LYSINE-SPECIFIC DEMETHYLASE 166 314 - -
Gso9g0021 315 SMART JmjN_1 50 91 IPR003349 -
Gso9g0021 315 Pfam jmjN domain 52 85 IPR003349 -
Gso9g0021 315 Pfam JmjC domain, hydroxylase 259 308 IPR003347 -
Gso9g0021 315 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 14 140 - -
Gso9g0021 315 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 166 314 - -
Gso9g0021 315 ProSiteProfiles JmjC domain profile. 224 315 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0021 Gso-Chr9 231603 234403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0021 2 312 JUMONJI Transcription Factor Family AT1G08620 42.017 3.03e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso9g0021 JmjC 1.8e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0021 - - gsj:114367691 658.677