Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0009 ATGTCTGAGTGTGGCTGTTCCGAGTCAGACCCTTCGTGTGGTTGTTGGTCGAGCAGCAGCAGCAGATCTGTGGCCTCAACTGAACTGAAGCTGTACCGAGCATTCATCTTCTGTGTTCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTATCTCTTCTACCTCCGACCGCGAACTAGGCTCCATTGGATTTCACACTTTCGCCTTCCCAGCAACAACAACCGCAATAATGCCATCTCCACATTGGGTTTGGGCTTGAACAAAGAACTTAGAGAGATGCTGCCCATTATTGTCTACAAGGAAAGCTTCTCCGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGACTACCAGGCAGAGGATAGGCTGCAACAAATACCTGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCATACCACCTGTCCTCTCTGCCGCTTCTCCCTACTAACCACTGCTAAATCTTCAACGCAGGCATCCGATATGCAGAACAATGAAGAAACACAAGCCATGGAATTCTCTGAATCAACATCTCCTAGGGATCTAGAAACCAATGTCTTCCAAAATGTCTCTGGAGAAGTTGCCATCAGCACTCACTGCATTGATGTTGAAGGGCAAAATGTGCAAAACAATCAATAG 660 0.4667 MSECGCSESDPSCGCWSSSSSRSVASTELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRTRLHWISHFRLPSNNNRNNAISTLGLGLNKELREMLPIIVYKESFSVKDTQCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTTAKSSTQASDMQNNEETQAMEFSESTSPRDLETNVFQNVSGEVAISTHCIDVEGQNVQNNQ* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0009 219 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gso9g0009 219 Pfam Ring finger domain 110 153 IPR001841 -
Gso9g0009 219 SUPERFAMILY RING/U-box 95 158 - -
Gso9g0009 219 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 17 176 - -
Gso9g0009 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 159 IPR013083 -
Gso9g0009 219 SMART ring_2 111 152 IPR001841 -
Gso9g0009 219 CDD RING-H2_EL5_like 110 153 - -
Gso9g0009 219 MobiDBLite consensus disorder prediction 165 186 - -
Gso9g0009 219 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0009 Gso-Chr9 100085 103940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0009 21 157 C3H Transcription Factor Family AT4G10150 61.111 3.29e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0009 K19039 - gmx:100794211 396.356