Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0008 ATGGAAATTAGAGAGTTAGAGATGATAAAGAAGGGGCCATGGAGTAGTGAGGAAGATGAGGTGCTGTTGAGACACGTCAGCAAATATGGCCCTCGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCCAGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCCAACTTGAAGACTGGATGCAAGTTTACAGCAGAGGAGGAAAGGTTGGTGATAGAATTGCAGGCACAATATGGGAACAAATGGGCCAAAATTGCAACGTATTTGCAAGGGAGAACCGACAACGATGTGAAAAACTTCTGGAGCAGTAGGAGGAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAGCGTCAAAGCCAAAGAAAAACAAAGGAAAAGCTCATCTTAATCAAGTGCAACAAGTGGAAGAAATGGTTCCACCATGCAGTTCCAATCAGGTGGAGGAAATTCTATCTTACGCTACTTCCTATATGGGAAACACTCTAGTGTTCGAGATGATCAACCTACAAGATTTGATAAAGCCAAACTATCAACAGTTGGAAAATGATTATCTGAGTGCAGTTGAGGTTGATGCCACCCCACTTCACACAGTTCCATCGTTTGAGTCTTCATCAGGGTACAACTTCCCTCTACTCCCTGAACCTGAACCACTCTTGGACTTTCCACTGTTCCCAGAGTGCCAGGACCTTGTTCCTGAGCCCTTTGACCCAAACTTTGTTTATGGGTTCGAGGAGAAAAAATGTTTACAATGTGCATGCAGCAGTAGCCAGAAGCTTGGGACCAGGTTGCCAACTTTCGGATTGGAAGGAAATTCTCAAAGTGCAAGTTCAAATGGCTTTTTCAAGGACTTCCCTAGCGAGATTTTTGAATACTTTGAGCACATTCCAACCTCATCAGATCAATGA 921 0.443 MEIRELEMIKKGPWSSEEDEVLLRHVSKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQYGNKWAKIATYLQGRTDNDVKNFWSSRRKRLERMLQKPPASKPKKNKGKAHLNQVQQVEEMVPPCSSNQVEEILSYATSYMGNTLVFEMINLQDLIKPNYQQLENDYLSAVEVDATPLHTVPSFESSSGYNFPLLPEPEPLLDFPLFPECQDLVPEPFDPNFVYGFEEKKCLQCACSSSQKLGTRLPTFGLEGNSQSASSNGFFKDFPSEIFEYFEHIPTSSDQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0008 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 54 IPR017930 -
Gso9g0008 306 Gene3D - 66 141 - -
Gso9g0008 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 114 IPR017930 -
Gso9g0008 306 ProSiteProfiles Myb-like domain profile. 67 110 IPR001005 -
Gso9g0008 306 Pfam Myb-like DNA-binding domain 14 64 - -
Gso9g0008 306 Gene3D - 10 63 - -
Gso9g0008 306 PANTHER MYB TRANSCRIPTION FACTOR 1 306 - -
Gso9g0008 306 Pfam Myb-like DNA-binding domain 67 107 IPR001005 -
Gso9g0008 306 PANTHER TRANSCRIPTION FACTOR DUO1 1 306 - -
Gso9g0008 306 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Gso9g0008 306 SMART sant 10 60 IPR001005 -
Gso9g0008 306 SMART sant 64 112 IPR001005 -
Gso9g0008 306 CDD SANT 67 106 IPR001005 -
Gso9g0008 306 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Gso9g0008 306 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0008 Gso-Chr9 93341 95494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0008 7 302 MYB Transcription Factor Family AT3G60460 41.875 4.07e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso9g0008 Myb_DNA-bind_6 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0008 K09422 - gmx:100793689 613.609