Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso9g0006 | ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTGGGTCAACACGCCGCCGAGAGGAATCAAGACGCTACTGCTTATGTCGGCAATCTCGACCCTCAGACAAGTGAGGAGTTATTATGGGAATTGTTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTTTTCATTGGCAATCTAGATCCTGATGTAGATGAGAAGCTCTTGTATGACACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTACAAGAAAGACACTAAGGGGGAACGGCATGGTACCCCGGCTGAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGACCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCGAGTGTTCCTCAGGCTAATGGCGTTGCTCCGGTGCCTCCCCGACCCTTTGCTAATGGGGTTGCTCCTCCTGCAATTCCTGCCCTCCGTCCACCGCCCCCTCAAGCTGCTGCATTCCAGCCTATGCCCGTTCCTGGACAACCAACGTGGCATCAGCAACAGCCAGGTCAAACATTGTTACCACCTGCAATGCCACCTCCACCTCAAGTCCAGCAGTTCAGGCCACCTCACCCTGGTATGCAGCAGATGCCACCACCTCCTCAAGCTCCTCCCAGGCCTCTTCCACCACCATCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACTGCCACCCCCTCAGCAACAGGGTGGACGGCCTTTGCCATACCCTCAGTCCGGAATGCCGCCTCCACCACCTCCCCAGTAA | 1098 | 0.4991 | MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQTSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPPAIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQTLLPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPSVMASQPPPVWRLPPPQQQGGRPLPYPQSGMPPPPPPQ* | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso9g0006 | 365 | MobiDBLite | consensus disorder prediction | 253 | 365 | - | - | |
Gso9g0006 | 365 | CDD | RRM2_SF3B4 | 111 | 193 | IPR034159 | - | |
Gso9g0006 | 365 | CDD | RRM1_SF3B4 | 28 | 100 | IPR034158 | - | |
Gso9g0006 | 365 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | MobiDBLite | consensus disorder prediction | 253 | 271 | - | - | |
Gso9g0006 | 365 | Gene3D | - | 111 | 200 | IPR012677 | - | |
Gso9g0006 | 365 | PANTHER | SPLICING FACTOR 3B SUBUNIT 4 | 1 | 355 | - | - | |
Gso9g0006 | 365 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 184 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | Gene3D | - | 16 | 110 | IPR012677 | - | |
Gso9g0006 | 365 | MobiDBLite | consensus disorder prediction | 289 | 365 | - | - | |
Gso9g0006 | 365 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 212 | 228 | - | - | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 232 | 244 | - | - | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 257 | 278 | - | - | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 285 | 301 | - | - | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 304 | 321 | - | - | |
Gso9g0006 | 365 | PRINTS | Proline rich extensin signature | 325 | 350 | - | - | |
Gso9g0006 | 365 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
Gso9g0006 | 365 | PANTHER | TRANSFORMER-2-RELATED | 1 | 355 | - | - | |
Gso9g0006 | 365 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 195 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso9g0006 | Gso-Chr9 | 57649 | 61538 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso9g0006 | 16 | 98 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.145 | 9.14e-06 | 45.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso9g0006 | K12831 | - | gmx:100791039 | 590.112 |