Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0006 ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTGGGTCAACACGCCGCCGAGAGGAATCAAGACGCTACTGCTTATGTCGGCAATCTCGACCCTCAGACAAGTGAGGAGTTATTATGGGAATTGTTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAATCTTTTCATTGGCAATCTAGATCCTGATGTAGATGAGAAGCTCTTGTATGACACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTACAAGAAAGACACTAAGGGGGAACGGCATGGTACCCCGGCTGAAAGAGTTTTGGCTGCAAGTAATCCAACTACACAGAAGAGCAGACCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCGAGTGTTCCTCAGGCTAATGGCGTTGCTCCGGTGCCTCCCCGACCCTTTGCTAATGGGGTTGCTCCTCCTGCAATTCCTGCCCTCCGTCCACCGCCCCCTCAAGCTGCTGCATTCCAGCCTATGCCCGTTCCTGGACAACCAACGTGGCATCAGCAACAGCCAGGTCAAACATTGTTACCACCTGCAATGCCACCTCCACCTCAAGTCCAGCAGTTCAGGCCACCTCACCCTGGTATGCAGCAGATGCCACCACCTCCTCAAGCTCCTCCCAGGCCTCTTCCACCACCATCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGACTGCCACCCCCTCAGCAACAGGGTGGACGGCCTTTGCCATACCCTCAGTCCGGAATGCCGCCTCCACCACCTCCCCAGTAA 1098 0.4991 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQTSEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTTQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPPAIPALRPPPPQAAAFQPMPVPGQPTWHQQQPGQTLLPPAMPPPPQVQQFRPPHPGMQQMPPPPQAPPRPLPPPSVMASQPPPVWRLPPPQQQGGRPLPYPQSGMPPPPPPQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0006 365 MobiDBLite consensus disorder prediction 253 365 - -
Gso9g0006 365 CDD RRM2_SF3B4 111 193 IPR034159 -
Gso9g0006 365 CDD RRM1_SF3B4 28 100 IPR034158 -
Gso9g0006 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Gso9g0006 365 MobiDBLite consensus disorder prediction 253 271 - -
Gso9g0006 365 Gene3D - 111 200 IPR012677 -
Gso9g0006 365 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 355 - -
Gso9g0006 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Gso9g0006 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Gso9g0006 365 Gene3D - 16 110 IPR012677 -
Gso9g0006 365 MobiDBLite consensus disorder prediction 289 365 - -
Gso9g0006 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Gso9g0006 365 PRINTS Proline rich extensin signature 212 228 - -
Gso9g0006 365 PRINTS Proline rich extensin signature 232 244 - -
Gso9g0006 365 PRINTS Proline rich extensin signature 257 278 - -
Gso9g0006 365 PRINTS Proline rich extensin signature 285 301 - -
Gso9g0006 365 PRINTS Proline rich extensin signature 304 321 - -
Gso9g0006 365 PRINTS Proline rich extensin signature 325 350 - -
Gso9g0006 365 SMART rrm1_1 26 99 IPR000504 GO:0003723
Gso9g0006 365 SMART rrm1_1 113 187 IPR000504 GO:0003723
Gso9g0006 365 PANTHER TRANSFORMER-2-RELATED 1 355 - -
Gso9g0006 365 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0006 Gso-Chr9 57649 61538 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0006 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 36.145 9.14e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0006 K12831 - gmx:100791039 590.112