Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0005 ATGGAGCCGTTGGAACCAACTCATGCTTCTCCAGATGAATTTGATTCTTTGTTGGAAGAACTGGAATCCGCCCATGAACATGTGCAGGACCGTATTAGGCGCCTTGAAGCGATAACTTCCAGAGCCAGGCAGTATCAGAGGCGGCCGCTGTTTCACACTCCGATCCAAATAACCAACTTCACAGGACAAACCAGCGCGCCAGCTGATGCTCGTGAAGAAGAAATGCAGAGCCAGGAAGTTGAGGAAAGAGTCGTTGAAAGTGGGAGAGGGTGCAAAAGGAAAGGTGCCCATTTAATAGCTAAGGCATTGGGGAGGACTGAAACCGATGCCAGTAAGGAAGGGGGAAGCACTGGAAATTTCTATGATTGCAATATATGCTTGGACAGGGCAAGAGATCCAGTGTTAGCCTGCTGCGGTCACTTGTTTTGTTGGCAATGCTTCTATCAGGTGCAAATTGTCTATTCAAATGCAAGGGAGTGCCCTGTTTGTAAAGGAGAGGTCACTGAAACTGGCATTATTCCAATTTATGGAAATTCGAGTGCCGATGGCAGTTGTGAGTCAGGATTAAAAGGAGCTGGTTTGAGAATTCCTCCTCGACCCGCCGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGCCAGGGAGCTTCTTCTTCTGTAATCCAAAATATCTGGCGGTTTCATCACCTTATTGGTGGGTTAGGAGCCCGGGTACAGTCACAATCACAAACCCCCAATGCTGCAACTGATAGAAATAATGGTTTGCTCGCTCAATCTCACCTGCAGACAGGCAATGATCGTGGTACTGGTTCCTCTCAGACTCCGATTTCAACCTTGTTAGTGCAAGGAGCTGCTTCGTTTTCATCCCTTTCATCAGCATTAAATTCTGCGATGGATTCTGCCGAAAGATTAGTTGAGGACCTTGAGTCATATATTCATAATCACCCAACAAATGGTGTCAATACAAATTCAACTCATGATGGGAATGTTGCTGCCACTGATTCCACACCTGCAGCTTCTACATCTCATTTTAGTAGGAATGTTGACACCATTGCTGATATTGGCTTAGAAATTCAGACAACAGATAGTAACATACAGACTGAGACTAGTCCATTGGACCCTTCTTCTTCTTCATCTCACAGAGGAAGCACTCGTGTTTCAACTTCAAGGCAAGTTTCAAATGATCGCATAAGAAGGAGATCAAGATGA 1212 0.4554 MEPLEPTHASPDEFDSLLEELESAHEHVQDRIRRLEAITSRARQYQRRPLFHTPIQITNFTGQTSAPADAREEEMQSQEVEERVVESGRGCKRKGAHLIAKALGRTETDASKEGGSTGNFYDCNICLDRARDPVLACCGHLFCWQCFYQVQIVYSNARECPVCKGEVTETGIIPIYGNSSADGSCESGLKGAGLRIPPRPAAPRIESFRQQLISQGASSSVIQNIWRFHHLIGGLGARVQSQSQTPNAATDRNNGLLAQSHLQTGNDRGTGSSQTPISTLLVQGAASFSSLSSALNSAMDSAERLVEDLESYIHNHPTNGVNTNSTHDGNVAATDSTPAASTSHFSRNVDTIADIGLEIQTTDSNIQTETSPLDPSSSSSHRGSTRVSTSRQVSNDRIRRRSR* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0005 403 MobiDBLite consensus disorder prediction 362 403 - -
Gso9g0005 403 MobiDBLite consensus disorder prediction 362 392 - -
Gso9g0005 403 SMART ring_2 123 163 IPR001841 -
Gso9g0005 403 ProSiteProfiles Zinc finger RING-type profile. 123 164 IPR001841 -
Gso9g0005 403 MobiDBLite consensus disorder prediction 316 345 - -
Gso9g0005 403 Pfam Zinc finger, C3HC4 type (RING finger) 122 169 - -
Gso9g0005 403 CDD RING-HC_AtRMA_like 121 165 - -
Gso9g0005 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 177 IPR013083 -
Gso9g0005 403 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 376 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso9g0005 403 Coils Coil 18 38 - -
Gso9g0005 403 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 6 376 - -
Gso9g0005 403 SUPERFAMILY RING/U-box 119 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0005 Gso-Chr9 51268 55352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0005 75 361 C3H Transcription Factor Family AT3G58030 31.481 4.60e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0005 K10666 - gmx:100794016 726.087