Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0003 ATGGAGCCCGAGCCCGAACCCGAGCTTGAGCCTGAGCCAGAGCCCGGGCCTGAGTTTAGTTCGAAAGAGGAAGCATTCTCATACTACCAAACCTACGCCAAATCCGTGGGCTTTTCCGCCATAATCAAAGCCAGCCGTCGATCTCGAATCTCCGGCAACTTCATTGACGCCAAATTCGCCTGCACCCGCTACGGCACTCCACCGAACCCTAAAAAACCCAAGCCCAAACGGGCCCGAACAAGCCCCAAAACCGATTGCAAGGCCTCCATGCACGTCAAACGAACACCCCACGGTACATGGATCATCTCTTCCTTCATCAAACACCATAACCACCAAACTAACTCAAATAATAATGCAAGTCCTTCGAGGAAGCCTAAGATTAAGAAAACGCTGCATCATTTGGTTTTCGCCGAAGGAGACCTTCAATTTCTGCTAGATACTTTCATGTCTATGCAAAACGAAAACCCTAATTTCTTTTACGCCGTTGATTTTAATGAGGAGCAGCGTTTGAGAACCGTTTTCTGGGTGGATGCTAAAGCCAGGCTTGATTACAGACACTTTAGTGATGTGGTGCTTTTGGACACCACGCATGTTAAAAATGAGTGCAAATTGCCCTTTGTTCCGTTTGTTGGTGTTAACCACCATTTTCAGGTTTTTTTGCTTGGGTTGGCGTTTGTGTCTGACGAGTCCGAATCGACGTTTTCGTGGCTGATGAGGAGTTGGTTGAGAGCAATGGGAGGATGTGCTCCTAAGCTGATGCTCACTGACTGCGACGAAGCGCTGAAGAAAGCTGTTGCTGAAGTGGCTCCTGAGTCTTGGCATTGTTTTTGTCTGTGGCACGTGTTGAGTAAGGTTCCAGAGAAGCTCGGTCGCGTGATGCAACGGCATGGTGGGGAGTTTGTGACTAGGTTTAACGAGTGTGTTTTGAGGTCTAGGACAAAGGAGCAGTTTGAGAAGAGGTGGGGGAAAATGGTTGGGAGGTTTGAGTTAGGTGATGAGAGTTGGTTGTGGGATATTTATGAGGATCGCGAACGGTGGGTACCAGCCTTTATGAAAGGCAGGGTTTTAGCAGGGTTGTCTACCGTGCAGAGATCAGAGGCTATGAACTGTTTGTTTGACAAATATGTGCAGAGGAAAACTACTTTGAAAGAGTTTGTGGAGCAATACAGAGTGGTATTGCAGGATAAGTGTGAGGAGGAAGCGAAAGCAGATTTTGTAACGTTGCATAGACAGCCAGCGTTGAAGTCCCCATCGCCGTTTGGGAAACAAATGGTGGAGTTATACACGAATGAGGTGTTTAAGAAGTTCCAGAGTGAGGTTTTGGGAGCTGTTGCTTGTCATCCAAGAAAAGAAAGTGAAGATGGACCAACAAAAGTGTTTAGGGTTCAGGATTTTGAAGACAATGAAGATTTTGTTGTCACCTGGAATGAATCGACCTTGGAAGTGTTGTGTGCCTGTTATTCGTTTGAATTCAATGGCTTTCTCTGCAGGCATGTAATGATTGTGCTACAGATTTCTGCTGTACATAGCATCCCACCTCGGTATATATTGAAACGCTGGACGAAAGATGCCAAGTGTAGACAAACAGCAGGAGATTTGTCTATGTCAGATGCAGTTGTCTCTGACTCTAGGGCTAAGCGCTATAATAATTTATGTCAGCAAGCCTTTCAATTGGGTGATGTAGGGTCTTTATCACAAGAGAGTTACATTGCTGCTATAAATGCATTGGAAGCCGCATTGAGAAAGTGTAAGAGCCTGAATGATTCAATTCAGAGTGTCAGAGAACCGAACCTGCCATGTTCTGGTTCTCAAGAAGGGATTCTGATCAGTAACAGTGTTGGTCATAGCAACAAAAGGGATAGTACTCTTGGAAAAAGGAAGGTATGCCCAGAACCAGAGACAGTTGCTATTGGAGTAAATTCTAACTGGCAGCAAGTGGAAAACTCCAATACACAAGCAGCTGGTCTTGATTGTTCGTATGAATCACAACAGAGCATTCAAGAGATGGGTCAGCTGAACTCGAGCTCAGAACCCGGATGGTTATTTTTCTTCTGA 2055 0.4574 MEPEPEPELEPEPEPGPEFSSKEEAFSYYQTYAKSVGFSAIIKASRRSRISGNFIDAKFACTRYGTPPNPKKPKPKRARTSPKTDCKASMHVKRTPHGTWIISSFIKHHNHQTNSNNNASPSRKPKIKKTLHHLVFAEGDLQFLLDTFMSMQNENPNFFYAVDFNEEQRLRTVFWVDAKARLDYRHFSDVVLLDTTHVKNECKLPFVPFVGVNHHFQVFLLGLAFVSDESESTFSWLMRSWLRAMGGCAPKLMLTDCDEALKKAVAEVAPESWHCFCLWHVLSKVPEKLGRVMQRHGGEFVTRFNECVLRSRTKEQFEKRWGKMVGRFELGDESWLWDIYEDRERWVPAFMKGRVLAGLSTVQRSEAMNCLFDKYVQRKTTLKEFVEQYRVVLQDKCEEEAKADFVTLHRQPALKSPSPFGKQMVELYTNEVFKKFQSEVLGAVACHPRKESEDGPTKVFRVQDFEDNEDFVVTWNESTLEVLCACYSFEFNGFLCRHVMIVLQISAVHSIPPRYILKRWTKDAKCRQTAGDLSMSDAVVSDSRAKRYNNLCQQAFQLGDVGSLSQESYIAAINALEAALRKCKSLNDSIQSVREPNLPCSGSQEGILISNSVGHSNKRDSTLGKRKVCPEPETVAIGVNSNWQQVENSNTQAAGLDCSYESQQSIQEMGQLNSSSEPGWLFFF* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0003 684 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 132 662 - -
Gso9g0003 684 PANTHER PROTEIN FAR-RED ELONGATED HYPOCOTYL 3 9 115 - -
Gso9g0003 684 ProSiteProfiles Zinc finger SWIM-type profile. 471 507 IPR007527 GO:0008270
Gso9g0003 684 Pfam SWIM zinc finger 479 503 IPR007527 GO:0008270
Gso9g0003 684 MobiDBLite consensus disorder prediction 1 23 - -
Gso9g0003 684 MobiDBLite consensus disorder prediction 63 90 - -
Gso9g0003 684 Pfam FAR1 DNA-binding domain 27 113 IPR004330 -
Gso9g0003 684 Pfam MULE transposase domain 190 283 IPR018289 -
Gso9g0003 684 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 132 662 IPR031052 GO:0006355
Gso9g0003 684 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 115 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0003 Gso-Chr9 73970 79093 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso9g0003 MULE 3.8e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0003 - - gmx:100792626 1343.18