Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0002 ATGACGACTCGAATTGCGCCCGGTGTGGGAGCCAATTTGCTGGGTCAACACGCCGCCGAGAGGAATCAAGACGCTACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGTGAGGAGTTATTATGGGAATTGTTTGTTCAGGCTGGTCCAGTTGTTAATGTCTATGTTCCAAAGGATAGAGTCACCAACGAACATCAGGGTTATGGATTTGTTGAATTCCGCAGTGAAGAAGATGCTGACTGTGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGCAAACCCATCCGTGTCAATAAGATCATGAGAGATCCTGACACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGATGGATGCTCGGAGCCTTGCTATGGAAATGACACTTGTTATTATGTGGCAAAAGCAACGGAGACCTCAATTTTATCATCAATATTGA 474 0.4451 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNEHQGYGFVEFRSEEDADCAIKVLNMIKLYGKPIRVNKIMRDPDTGNSRGFGFISYDSFEASDSAIEMDARSLAMEMTLVIMWQKQRRPQFYHQY* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0002 157 SUPERFAMILY RNA-binding domain, RBD 25 148 IPR035979 GO:0003676
Gso9g0002 157 CDD RRM1_SF3B4 28 100 IPR034158 -
Gso9g0002 157 PANTHER TRANSFORMER-2-RELATED 99 130 - -
Gso9g0002 157 PANTHER TRANSFORMER-2-RELATED 1 100 - -
Gso9g0002 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Gso9g0002 157 SMART rrm1_1 26 99 IPR000504 GO:0003723
Gso9g0002 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Gso9g0002 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 133 IPR000504 GO:0003723
Gso9g0002 157 Gene3D - 100 153 IPR012677 -
Gso9g0002 157 Gene3D - 8 99 IPR012677 -
Gso9g0002 157 PANTHER SPLICING FACTOR 3B SUBUNIT 4 99 130 - -
Gso9g0002 157 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0002 Gso-Chr9 25345 31760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0002 15 129 Eukaryotic Initiation Factors Gene Family AT4G34110 32.484 6.83e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0002 K12831 - gmx:100791039 237.269