Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2990 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAGGGGTTCAAAGGAATCAGAAGAGTGACAAGGTCTAGATCCTCCTTCCACCATGGTGCTTCAAGTGAGCCTCTTTACTCTTTGGATGGGAGATTTTCTGTATCAAGTGAAAGAGTTCGAACTCAGAGAACAAAGTCTGATGCCTCACAATATCAAATTACAAGTAGACAGTTAAAAACCGACACTCATACTGCTACGAACCGGATGTCAAGGGATAATCTTTTTTCGAGAGACAAAATGGATCAACGGTTAAAGAACTCTTCTACCGATACAGATTCAGGCAAAGGAATTGATATGCCAAGGAATGAGATTACTGAGGTGACTGAGCAAGAAGCTAACATAGTTAAAGATAATTATTCAAACCAAGTTTCTCTAAAAAGAGGCAAAGAGAAGAATTTCAATGAACTTGTGGAGGAGGAAGATCCTGTCAAGGATGCAAAGATGCACAGCAGAAGTTCCAGTATACATATGCTTGGACACTCTAGTGAAACTAGAAAGAATATAAAACCCCAGAAGGACTCATACACTAGATCAAATAGCAGCAGGAATAAAGATAGCAATCATGCTATGCAAGCTGCTTCTAGTCTTGCTCTTGATCAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGCTATATAAAGCATTTCTCCAAAGATGTGAATTTTCGGTCAACATTGCGTGGCAAATGCTTCTCCTCCTTGAATTTGATTGAAATGGAAGAAGAGAACATTACGGAGACCAAAGTCATAAGAAGTCTTGAGCAAGCAATCGAGGCCATTGATCAAACTGCTGAGGAACCTATATCTACCATGTATCTGAAAAGAACCACGATGCAACTTAGCATTATTACAGGTTTGAGTTTAAATGATTTTAAGTACGAGTGTACGTGTGGGATTCCAAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCGCCTTTTCAGGCACGGACTGTATTGTTGCCTGAACTGTGGGAGCACCTATTTTCTCCACAATTTTCTCATTTGAAGGCATGGTACATCAAGGAAGCAGAATTTCTAGAAGATGCACCAAGCAAAACAAGAAAGCTAAAACTTCTTCAAAAAGTGTATAATGAACATTTGGATTCTGGAACTCATGTATTTGCCGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCGCCTATTCCTTCAATTGGCATTCCATCAGCTTCTGTAACGGGAAGTCAAGAGGGAAATTCACTTGGTTATTCATTTGAGTCTGCTAGCTCCATTGACCCACTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTGACTCTAGCAAATCCAGAGTTTACCAAGTCAAAGATATTAATGATGATGATAACCTAGACAACTGCATGAAAGGCTCTTGTGGTTCAACTATTGTTAGACAGACACTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGATTTCTCTATAGGTGTAGCAATTGATACAATCAAGCCTCACAATGGAAATTCAATGACAGCTTCAGAAGAATGGCAGAAAAGGAATCTAGTCGATGACATTAATAACTCTTTCTCTATGAAAACTAATTTAAGCAGCCACAGTATTGATGCTCTATCACATGAAAAAGCTAGTGAACTTGTTCTTAAAAAGCCAAATAAGACAAGTTCTACTCTTGAAGGGTCATATTTTCCAAGTATTCCACATGAATTTATTTGTCCTCTTACTGGAGATCTCTTTGAGGAACCAGTCACCCTAGAGACTGGTCAAACATTTGAAAGAGAAGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCAGTAACAGGAAATAATTTGGAATGTGTGACCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTGGATTACCTTATTGATTTTTCTTTTCAAACAGTGGAGAATTTGGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCATTTCTCCTCTTTGAAAGAAGAGGACAAATCAACTTATGCTAAGCATCTCATCTCTTTAGGAGTTCTTCCATTTCTTTTTAGGAGGTTTGAACAGGGAAATGTGAAAGAAAAATCACATGTGGTGTCACTTTTGCTAAACTGTATTCAAGTGGACTCTGGCTGCATATATCAGATAGCAAGGAGTGTTAACAGAAAATGTCTTGTTGAGCTTCTTCACAGTAAGGAGGCTACTCCGACAACAAATGCAATAATATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACCTCATTCATAAGTGGCTTGGCGGGTGAAAAAGTATTTAATATAATGCATATTCTGCTCATGTATCTCAAGAATCCTTCTCCATTTGAAAAGCCCCTAATTGCTGTCCTTCTGTTACACTTTGATCTGCTGGTTGAGCCTCAAAAGTTTGGCATATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATGCCAGCTTAAATGATGAGAAGGGCAGAGAGAAGTGTTGCAGAGCACTATTAATCTTGTGTAGCCATTTTTCTTCAACTGGAAAGATACCAACCATGACTAGCATCTTAAAACAAGCAGGTTATAATAATGATAGCCTAGAAGTGAAACCTCCTGGCCATGAAGAAGAGGGTCAGCAGTTATATGTAACCATTTCAGTTTCATCGGAAGATGAAGAAAAAAGGGGTGAAGAGTTGCTAAAGAAGTTGTTAGAGTCGTTGATTGGTGATGGAGAAAGCCCTTTTTTGAAGAGCATATCTAGATGTTTAGATACTAATCACCTAGATTTGGTGAGAACGTGTCTAATAACTGTGACATGGTTGAGCTCCTCACTATCTTCGCTATTTAGTGCTGGATTGCATCTTCCCGCCTTCTTATCCATCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGA 3144 0.3874 MASSLEELLAEEGFKGIRRVTRSRSSFHHGASSEPLYSLDGRFSVSSERVRTQRTKSDASQYQITSRQLKTDTHTATNRMSRDNLFSRDKMDQRLKNSSTDTDSGKGIDMPRNEITEVTEQEANIVKDNYSNQVSLKRGKEKNFNELVEEEDPVKDAKMHSRSSSIHMLGHSSETRKNIKPQKDSYTRSNSSRNKDSNHAMQAASSLALDQVAVQAVVSILNGYIKHFSKDVNFRSTLRGKCFSSLNLIEMEEENITETKVIRSLEQAIEAIDQTAEEPISTMYLKRTTMQLSIITGLSLNDFKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTVLLPELWEHLFSPQFSHLKAWYIKEAEFLEDAPSKTRKLKLLQKVYNEHLDSGTHVFAVYYKDWLTEGVESPPIPSIGIPSASVTGSQEGNSLGYSFESASSIDPLSPQPMVSKKLYDSMFGDSSKSRVYQVKDINDDDNLDNCMKGSCGSTIVRQTLTYESETVKFTDQDIEDFSIGVAIDTIKPHNGNSMTASEEWQKRNLVDDINNSFSMKTNLSSHSIDALSHEKASELVLKKPNKTSSTLEGSYFPSIPHEFICPLTGDLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNNLECVTMPFTNLILKRLIDNWKSERLDYLIDFSFQTVENLEELKLKKRDEAAVFKLESHFSSLKEEDKSTYAKHLISLGVLPFLFRRFEQGNVKEKSHVVSLLLNCIQVDSGCIYQIARSVNRKCLVELLHSKEATPTTNAIIFLTELLSMKRRKDVTSFISGLAGEKVFNIMHILLMYLKNPSPFEKPLIAVLLLHFDLLVEPQKFGIYREVAVNAIAEALDASLNDEKGREKCCRALLILCSHFSSTGKIPTMTSILKQAGYNNDSLEVKPPGHEEEGQQLYVTISVSSEDEEKRGEELLKKLLESLIGDGESPFLKSISRCLDTNHLDLVRTCLITVTWLSSSLSSLFSAGLHLPAFLSIISQLKGILENGELELKTLASLSLLNFSKISE* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2990 1047 PANTHER OS04G0584500 PROTEIN 1 1047 - -
Gso8g2990 1047 MobiDBLite consensus disorder prediction 184 202 - -
Gso8g2990 1047 CDD RING-Ubox_PUB 611 652 IPR045210 -
Gso8g2990 1047 MobiDBLite consensus disorder prediction 56 82 - -
Gso8g2990 1047 Pfam U-box domain 607 677 IPR003613 GO:0004842|GO:0016567
Gso8g2990 1047 MobiDBLite consensus disorder prediction 147 202 - -
Gso8g2990 1047 MobiDBLite consensus disorder prediction 83 99 - -
Gso8g2990 1047 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 681 IPR013083 -
Gso8g2990 1047 SUPERFAMILY RING/U-box 601 677 - -
Gso8g2990 1047 ProSiteProfiles U-box domain profile. 606 681 IPR003613 GO:0004842|GO:0016567
Gso8g2990 1047 ProSiteProfiles ACT domain profile. 893 973 IPR002912 -
Gso8g2990 1047 PANTHER OS04G0584500 PROTEIN 1 1047 - -
Gso8g2990 1047 SMART Ubox_2 610 674 IPR003613 GO:0004842|GO:0016567
Gso8g2990 1047 Gene3D - 697 1047 IPR011989 -
Gso8g2990 1047 SUPERFAMILY ARM repeat 722 1044 IPR016024 -
Gso8g2990 1047 ProSiteProfiles Zinc finger SWIM-type profile. 292 330 IPR007527 GO:0008270
Gso8g2990 1047 MobiDBLite consensus disorder prediction 147 162 - -
Gso8g2990 1047 MobiDBLite consensus disorder prediction 48 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2990 Gso-Chr8 47561628 47568897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2990 607 758 U-box Gene Family AT5G42340 28.049 1.02e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2990 - - gmx:100803199 2007.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2478 18 57519970 57527692 Gso8g2990 8 47561628 47568897 GST