Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2979 ATGGAGAAGGTGAATTTTGTGAAGAATGGAGAGCTTAGATTGCCTCCGGGGTTCCGTTTCCACCCGACTGATGAGGAGCTGGTTCTGCAATACTTGAAGCGCAAGGTCTTCTCCTGCCCTTTGCCAGCCTCTATCATTCCTGAGCTTCATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATACTTCTTTAGCACCAAAGTGGCCAAATATCCCAACGGAAATCGCTCCAACAGAGCCACAAATTCGGGTTATTGGAAGGCAACTGGCTTGGACAAACAAATTGTTACTTCAAAAGGCAACAACCAAGTTGTCGGAATGAAGAAGACACTTGTTTTCTACAGAGGCAAGCCTCCTAATGGATCCAGAACTGATTGGATCATGCACGAGTATCGCCTCATCCTTAACGCCTCTCAGTCTCAGAGCCATGTTGTTCCCATGGAAAATTGGGTTCTGTGTCGCATATTTTTGAAGAGGAGAATTGGTGCTAAAAATGGGGAGGAGAGCAACTCTAAGGTGGTTTTCTATGACTTCCTAGCGCAGAACAAGACCGATTCCTCCTCATCGGTCGCCAGTGGAATTACACATGAATCAGATGAACATGAAGAGAGCAGTAGCTCCAACACCTTCCCTTATACTATTAGAAGAAAACCTTAA 675 0.4563 MEKVNFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPELHVCKSDPWDLPGDLEQERYFFSTKVAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNNQVVGMKKTLVFYRGKPPNGSRTDWIMHEYRLILNASQSQSHVVPMENWVLCRIFLKRRIGAKNGEESNSKVVFYDFLAQNKTDSSSSVASGITHESDEHEESSSSNTFPYTIRRKP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2979 224 MobiDBLite consensus disorder prediction 190 224 - -
Gso8g2979 224 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Gso8g2979 224 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 223 - -
Gso8g2979 224 PANTHER NAC DOMAIN-CONTAINING PROTEIN 83-LIKE 1 223 - -
Gso8g2979 224 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Gso8g2979 224 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Gso8g2979 224 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2979 Gso-Chr8 47482255 47483704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2979 1 216 NAC Transcription Factor Family AT5G13180 57.647 8.79e-96 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso8g2979 NAM 2.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2979 - - gmx:100170744 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g2488 18 57643085 57644850 Gso8g2979 8 47482255 47483704 GST