Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2962 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCATATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACGACCACCATCTCCTTCTCCATATTCTTCTCTTTACACTCCTTGTTCCTCTTTCTTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCATAGCTCCTCCAATACAGTTCCTTCAGCTTTTTCTAGCTGGAACCCTTTGGACTCAAATCCTTGCAATTGGTCCTACATCAAATGCTCCTCAGCAAGCCTTGTCACTGAGATAGCCATTCAAAATGTTGAGTTAGCGCTTCATTTCCCTTCAAAAATCTCATCCTTTCCTTTCCTTCAAAGGCTAGTGATTTCTGGGGCTAACCTCACTGGGGCTATCTCACCTGACATTGGAAACTGCCCTGAGCTTATAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGGGGAATTCCTTCAAGTATTGGTAGGCTAAAAAATCTTCAAAACTTGAGCTTGAACTCTAACCATCTCACTGGACCAATCCCAAGTGAGATTGGTGATTGTGTCAATCTCAAGACCCTTGATATCTTTGATAACAACCTTAGTGGGGGTCTTCCTGTGGAACTAGGAAAGCTGACAAATCTGGAAGTTATAAGAGCAGGAGGGAACAGTGGCATTGTGGGGAAGATTCCAGATGAACTTGGAGATTGCAGGAATTTGTCAGTGTTAGGTCTTGCTGACACTAAAATTTCTGGTTCATTGCCTGCTTCACTGGGTAAGTTAAGCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGAAACTGTTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGGTCTCTCTGGCTTCCTGCCAAGAGAGATTGGTAAGCTTCAGAAGCTTGAAAAGATGCTGCTGTGGCAAAACAGTTTTGGTGGGGGCATTCCTGAGGAAATTGGCAACTGTAGAAGCTTGAAGATTCTTGATGTCTCCTTGAATTCTCTCTCTGGTGGAATACCTCAGAGTTTGGGGCAGCTCTCAAATCTTGAGGAGCTTATGCTGAGTAACAATAACATATCTGGTTCAATTCCAAAAGCTCTCTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCAATTCCACCTGAGCTTGGAAGCTTGACAAAGCTAACAGTGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAACATTGGGAGGTTGTAAATGCCTAGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGTCTGTTTAAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCCATCCCTCCTGAGATTGGCAACTGCAGTTCCCTCATTCGCCTCAGGCTCGTAGACAACAGAATCAGTGGGGAGATACCGAAAGAAATCGGCTTCCTCAATAGCCTCAATTTCCTTGATCTGTCTGAGAATCGCCTTACTGGATCAGTACCACTTGAGATTGGAAACTGTAAAGAATTGCAAATGCTGAATCTAAGTAATAACTCCCTTTCTGGTGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTGTTGGATGTTTCTATGAATAAGTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCATTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCTGGTCCAATTCCCTCCTCTCTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAACTTCTCAGGGAGCATCCCACCAGAACTGCTTCAAATTGGAGCACTTGATATTTCTCTAAATTTGAGTCATAATGCATTATCTGGCGTGGTCCCACCAGAGATTTCTTCTCTGAACAAGCTGTCAGTTCTAGACCTTTCACACAACAACCTTGAAGGTGACTTGATGGCATTTTCAGGGCTCGAAAATCTTGTTTCTCTGAACATTTCCTACAACAAGTTCACTGGTTATCTGCCAGACAGCAAGTTATTCCATCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTGATGGTCATGATTCATGTTTTGTTAGCAATGCTGCAATGACAAAAATGCTGAATGGCACTAATAATTCTAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCGTTGGTTGTTGCAATGGCAATCTTTGGAGTTGTTACGGTCTTTAGAGCAAGGAAAATGATTCAAGCAGACAATGATTCTGAGGTGGGAGGGGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTGAGTTTTTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGATTCCAATGTGATTGGAAAGGGGTGTTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATGTCATTGCTGTGAAAAGGCTATGGCCAACAACATTGGCGGCAAGATATGATAGTAAAAGTGACAAGTTAGCAGTTAATGGAGGGGTACGCGATTCCTTTTCGGCCGAGGTAAAAACTCTTGGTTCTATTCGCCACAAGAACATAGTCAGATTCTTGGGGTGCTGTTGGAACAGAAACACCAGATTGCTTATGTATGATTACATGCCGAATGGGAGTCTAGGAGGTCTGCTTCATGAAAGAAGTGGCAACTGCTTGGAATGGGATATCAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATGACTGTGCTCCTCCAATTGTTCACAGGGACATTAAAGCCAACAACATCCTCATAGGCACTGAATTTGAACCATACATTGCTGATTTCGGGCTCGCAAAACTTGTTGATGATAGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATCGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTTTATAGCTATGGTATTGTTGTATTAGAAGTACTAACCGGGAAGCAACCGATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGCTAGACGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAGATGCTGCAGACCTTAGGTGTGGCTTTGCTGTGTGTGAATTCAAGCCCAGATGACAGACCAACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTGATGCATCTTCTGCAAATGATCAACAAGAAAGAAATCATTCCATTGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAAACACCAAAGTAA 3462 0.4315 MLVVEFLRELPMSMPRQALSNQNHNHMSRQAFITNHHHHDHHLLLHILLFTLLVPLSFAANDEVSALVSWMHSSSNTVPSAFSSWNPLDSNPCNWSYIKCSSASLVTEIAIQNVELALHFPSKISSFPFLQRLVISGANLTGAISPDIGNCPELIVLDLSSNSLVGGIPSSIGRLKNLQNLSLNSNHLTGPIPSEIGDCVNLKTLDIFDNNLSGGLPVELGKLTNLEVIRAGGNSGIVGKIPDELGDCRNLSVLGLADTKISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENGLSGFLPREIGKLQKLEKMLLWQNSFGGGIPEEIGNCRSLKILDVSLNSLSGGIPQSLGQLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTVFFAWQNKLEGGIPSTLGGCKCLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSENRLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNKFSGEVPMSIGQLISLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNNFSGSIPPELLQIGALDISLNLSHNALSGVVPPEISSLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKFTGYLPDSKLFHQLSATDLAGNQGLCPDGHDSCFVSNAAMTKMLNGTNNSKRSEIIKLAIGLLSALVVAMAIFGVVTVFRARKMIQADNDSEVGGDSWPWQFTPFQKVSFSVEQVLKCLVDSNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTLAARYDSKSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGGLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGTEFEPYIADFGLAKLVDDRDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVLDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLDASSANDQQERNHSIEEPMSMISTSSTNLHLHYSPHRPQTPK* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2962 1153 Pfam Protein tyrosine and serine/threonine kinase 815 1092 IPR001245 GO:0004672|GO:0006468
Gso8g2962 1153 SUPERFAMILY Protein kinase-like (PK-like) 794 1094 IPR011009 -
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 456 552 IPR032675 -
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 59 214 IPR032675 -
Gso8g2962 1153 SMART LRR_typ_2 512 536 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 368 391 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 657 679 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 392 416 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 680 705 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 608 632 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 560 584 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 440 464 IPR003591 -
Gso8g2962 1153 SMART LRR_typ_2 175 199 IPR003591 -
Gso8g2962 1153 SUPERFAMILY L domain-like 458 718 - -
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 215 314 IPR032675 -
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 637 725 IPR032675 -
Gso8g2962 1153 SUPERFAMILY RNI-like 236 526 - -
Gso8g2962 1153 Gene3D Phosphorylase Kinase; domain 1 795 901 - -
Gso8g2962 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
Gso8g2962 1153 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Gso8g2962 1153 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 28 1116 - -
Gso8g2962 1153 SMART serkin_6 811 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2962 1153 ProSitePatterns Protein kinases ATP-binding region signature. 817 839 IPR017441 GO:0005524
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 315 455 IPR032675 -
Gso8g2962 1153 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 1116 - -
Gso8g2962 1153 Pfam Leucine rich repeat N-terminal domain 60 101 IPR013210 -
Gso8g2962 1153 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Gso8g2962 1153 PRINTS Leucine-rich repeat signature 515 528 - -
Gso8g2962 1153 PRINTS Leucine-rich repeat signature 657 670 - -
Gso8g2962 1153 Pfam Leucine rich repeat 345 405 IPR001611 GO:0005515
Gso8g2962 1153 SUPERFAMILY L domain-like 84 290 - -
Gso8g2962 1153 SMART LRR_sd22_2 368 394 - -
Gso8g2962 1153 SMART LRR_sd22_2 175 198 - -
Gso8g2962 1153 SMART LRR_sd22_2 657 682 - -
Gso8g2962 1153 SMART LRR_sd22_2 440 469 - -
Gso8g2962 1153 Gene3D Ribonuclease Inhibitor 553 636 IPR032675 -
Gso8g2962 1153 ProSiteProfiles Protein kinase domain profile. 811 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2962 1153 Gene3D Transferase(Phosphotransferase) domain 1 902 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2962 Gso-Chr8 47259937 47264480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2962 58 1110 Receptor kinase-like Gene Family AT5G56040 47.895 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso8g2962 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2962 - - gmx:100794698 2207.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1426 18 41555822 41560005 Gso8g2962 8 47259937 47264480 GST