Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2958 ATGAAGCTGCTCTCTCCAAAATTGTTCACTCTCGCCATTCTGCTCGCGGCGGCGCTGGTTTTAGCTTCCGCCGACGCAGTCAGTGACAATGAGATGCAGAAACATGAAGCCACGGAATCAAGGGACGTGGTTGAAGAGAAGTTGCGAGTGCAGAGCTTGAAGAATTCGTCAATGGCAGAAAGGTCAGGGGGTGCTTTAAATGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCCATGGTTGATGAGAGCATACGCAATTACACAGCTCGAAGGAACCTGAACTTCTTCTCATGCGGGACCGGGAACCCAATCGACGACTGCTGGCGGTGCGACAAGCGGTGGTACGCCCGCCGCAAGCGCCTAGCCAACTGCGGCATCGGCTTCGGCCGCAACGCCATCGGTGGCCGCGACGGGCGGTACTACGTGGTGTCGGACCCTAACGACGACGACCCAGTAAACCCCAAACCCGGTACCCTCCGCCACGCCGTGATCCAGGACCGCCCCCTCTGGATCGTGTTCAAGCGCGACATGGTCATAACCCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACCATCGACGGCCGTGGCGTGAACGTCCACATCGCTTACGGTGCGTGCATCACCATACAGTTCGTCACCAACGTGATCATCCACGGGTTGCATATTCACGACTGCAAGGTAACTGGTAACGCAATGGTTCGGAGCTCTCCCTCGCATTATGGGTGGAGGACTCTTGCTGATGGCGATGGGATCTCCATCTTTGGCTCGAGTCACATTTGGATTGATCATAACTCGCTGTCGAGTTGCGCTGATGGGCTTGTGGATGCTGTTATGGGGTCCACTGCTATTACTATTTCCAACAACTACTTCACTCACCACAACGAGGTTATGCTACTGGGTCACAGTGACTCTTATGTCCGTGACAAGCAAATGCAAGTAACCATTGCTTACAACCATTTTGGGGAGGGTCTTATCCAAAGAATGCCCAGGTGCAGACATGGGTATTTCCACGTGGTTAACAATGACTATACCCACTGGGTAATGTATGCAATTGGAGGCAGTGCTAATCCCACAATTAACAGCCAGGGTAACAGATACCTCGCTCCTCTGAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTGGATACAGGGTCATCCGTATGGAAAAGTTGGAATTGGAGATCTGAAGGGGACCTTTTGCTCAATGGAGCCTTTTTTACTTCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCTAAATCATCTTCTTTGGTTGGTACCATCACATCTGGAGCTGGTGTTCTTAAATGCCGCAGGGGTGTCATGTGTTAA 1356 0.5162 MKLLSPKLFTLAILLAAALVLASADAVSDNEMQKHEATESRDVVEEKLRVQSLKNSSMAERSGGALNEHAVDNPEEIASMVDESIRNYTARRNLNFFSCGTGNPIDDCWRCDKRWYARRKRLANCGIGFGRNAIGGRDGRYYVVSDPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKVTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWIDHNSLSSCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQGNRYLAPLNPFAKEVTKRVDTGSSVWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTITSGAGVLKCRRGVMC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2958 451 Pfam Pectate lyase 186 366 IPR002022 -
Gso8g2958 451 PANTHER PECTATE LYASE 48 448 - -
Gso8g2958 451 Gene3D - 102 444 IPR012334 -
Gso8g2958 451 PANTHER PECTATE LYASE 18-RELATED 48 448 IPR045032 GO:0030570
Gso8g2958 451 SUPERFAMILY Pectin lyase-like 80 446 IPR011050 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Gso8g2958 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Gso8g2958 451 SMART amb_all 177 374 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2958 Gso-Chr8 47197297 47203902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2958 36 451 Polysaccharide Lyase AT4G13710 77.123 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2958 K01728 - gmx:100790659 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1421 18 41377068 41383882 Gso8g2958 8 47197297 47203902 GST