Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2955 ATGGCACTAAATAAGACAGGGTTGTTAGGTACCAACACTGGTAAGGATCCTAGCATGCTTCCTAAACATGCCCTAGCCCAACCAGAATTATCCAGTGGTGTTTCAAATACAGGACGTCATGTACATAATAATATTGCTATACAGGCAGGGGAAGAATTTTCTGCAAATGTTGGTCGTGATGGAATTGCTGCTGGAAGGGTTCCTGTTTCACCTGATATACCTCGACATTGTAAGAATGTGTTTGGGTTGAATAGGGAGAATGGCAATGTGAGATATGAAGATCTTACTAATATTTTGGGGTTGAGGAGAATGGACTCTGAGAGTTCTTCTGATATATCTGACTTTGTTGCTATAAAACAGCCAGCACAGGAGATGGAAACCAGAGCTTCTGTAAACATTTTAAGCAAAATTCAGAAGGGAGATGGTGTGTCGAGGAAGGCTGTTCAAGAACCATTTGGTGACCAGTCTAGTCTCGCTTCAGCTGTATCACCCCTTCGTAGATATGAAGCTTCTCAGTCCAATGGATTTTCTGGTTCGGGAATTTTAGATGATTTTCTGACTGGGAAAATGAAGTTTCTATGCAGCTTTGGTGGAAAAATATTACCAAGACCCGGTGATGGGAAACTCAGATATGTAGGGGGAGAGACACACATTATATCTATCCGAAAGGATATTTCATGGGCACAGCTTATGAAGAAGACCTTGGGTATTTGCAATCAACCTCACACAATCAAGTACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGATGAAGATCTTCAAAATATGAAGGAGGAATACCATGGGCTTGAAAGGCATGAAGGTTCTCAAAAACTCAGAATTTTTTTAGTTTCTCTGGGTGAATCTGAAGAGATATCATCGACCGAGGTGAGTGCTGTTCAGCAGAGTGATCCAGATTACCAATATGTTGTCGCCGTGAATGGCATGGGAGACCCTACTAGGACAAACATTGGTGGGCAAAGTTTGACAAATGAAACCAGTCAATTTGGGACAGAATTGAATTTGGCTCCAGTTTTTCCGAAAATTCCAAATGCTTCTTCTCTGTTGGAAATCAGGGATGGTATTAATGCTTTAAATCCAGATGGAATTTTGAATGATTCCCTGAATTTGCAAAGGCCCTTGCCAATTCCTCCCACTCCAATCCTGGTAACAGGTTCTAACACAGGTTATATACAATTGCTCGGTAACAACTCATGCCAGGGAAGTATTGAGAGCAATGCATCATTTGCTACTGCTCATCTACATCCAGAGTACTCCAATATAAGCACTGCTGATTGCAGATACCCTCAACAAGCGGCTGCTACTTTGTCAAGTGACACCTGCCCTTATCAGCATGGTGATGCTGGTTGGCCCAAAAAGCTCAATGGGCATTTGGACTACAATCCTGGCAATGAATTTGTGACTCCTGTATATGTTAATCCAAGTGATGGTTACAGTGATGAAGTTTTTGGTGGAAGGTCCTTGCAAAAGGAAAGAAGAGTCTACTCTGAAAATCCTCTTTCACGCTTGGATGATCCAATCTATCAACAGGGTGAATCTTATGGAATTACAGACTCCCCTCATGGGATGCCCCATGCCTTTTCTGATCCACAGTTGCACGAGAGTGAAGCAAGGTCTGGTTACAACTCGCAAAATGGATTTGGTCAATCTTTCTCCCTCAGGCTTGAAAAGTGTCAATTATCTTCAATGTTACCCCCTAAAGTCTCACAGGTGAACCTTATGGAGAATCAGCATGATTCCATTGTCCATCATCCTCAAAGGCAAAGTAAGACACCAAAAGTTGAGTCAGCTGAGCCACACAAAAGGCAAGATTTGGCATCTTCTCGATACTATGATTCATTGGGAATGAATGATCCTGTTCATATGATGGATAGCATTTTAACTGAAAAGAAGAACCTTATTGCTCAAACTGACTTGAGTGGACCCTGCCATGTTGCTAAGGATATTCAGGAAAATTCTGTGAAATTAGAAAGGATGAAGTTAATTGAAGAAAAGAATCCAATTTTTATGGATAGCAAGGTTCATGAGGCGAAATCAACTGTCATTGATATGGGACATGTGACTGAATTGCATGTTTTGGACTCCTTCCCTGCTAATAACTTCAATGCTAAGATTAATATGCAAAAGAATTTGGAGCTACCTTCTGAGGGTATAGTTCCAGCTTCATCAGGCATGATGGGCCTCTCTCTAAATAATCTTGTGGCAAAGGCCCCGTCTGATCCTGACATGAGCCAAAGGATTAGTGATCACAAAATGTATGCTTTGGCTGAAAGTCTGAATGGTGAACAAGGGGTTGATTTTTCATTGACCAGAAATTTTGATTTAAATGCTCCAACTTTAAATTGTGAAGTAGGCTCTTGTGACAAAATTTCTCAAGGAGATCATATGTTCAAGCTGTCCATTCACCCAGATTCTCTTAAAGCTGAACAAATTCATCCTTCTAAGAATCAGATGACTGCAGGTTTTCAAGAAAATCCAACAGTAAGCTCTGCAAGTTTGTATCCTGCAGCATTTCATGATGATCTCAGTCCAAGTCCAAACATGCCATTGAATGACCAGGATAATTCAAGCAATATTATGTCTTTTAAAATTGCACCATCTTATCTTGATGACTTTATTATCAGCACTGGTCAAATGGTGAATCAGATTATCCCTGAACACTCTGCCTCTGGAATGTCAAAAGTTGAAGATAAAATTTCAGAACAATCAAGAAGGTGTAATGATGCAAATCGAGTGGAGCCATTTGTTGTAGTAGAAGACATGACTGGTGTTGTTCGTCCATATATTTCAGAGGATGTTGGAAGTGCTGTTGTATCCCCGTCTCACATGGAAGCTGAGAGCATAGTCCCTGAGTCTGAACCTGCGGATTTTAATGACGATCAAACAGACAAAAATGAATTCCTCTCTGATGCAATGATAGCAGAAATGGAAGCTAGCATTTATGGTTTACAGATAATAAGGAATGCTGATCTTGAAGACCTTACAGAGTTAGGATCTGGTACTTATGGAACTGTTTATCATGGAAAATGGAGGGGGACAGATGTTGCTATAAAGAGAATTAAGAAGAGCTGCTTTGCAGGGAGGTCTTCTGAGCAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCAGATGGGGCTGGTGGCACCCTAGCAACTGTAACAGAGTATATGGTTAATGGTTCCCTTAGGCATGTCCTTGTAAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTAATAGTTGCCATGGATGCAGCTTTTGGTATGGAATATTTGCACTCAAAAAACATTGTCCATTTTGATTTGAAATGTGACAATTTACTTGTCAATCTAAGGGATCCACAACGACCCATTTGCAAGGTTGGAGATTTCGGATTATCAAGAATTAAACGCAATACCCTTGTATCTGGTGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGGAATAGCAGTCGGGTTTCTGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAGCTATTAACAGGAGAGGAACCTTATGCAGATATGCATTGTGGCGCCATTATTGGGGGTATTGTAAAGAACACTCTTAGACCTCATGTGCCTGAACGGTGTGATTCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCTGAAAGCCGGCCATCATTCACGGAGATAACTGGCAGGTTAAGATCTATGTCTATGGCCCTTCAAGCAAAAGGGAATCATCAGACATATCAGTTAAGACCTGGTGGAGCTTCCTGA 3873 0.4139 MALNKTGLLGTNTGKDPSMLPKHALAQPELSSGVSNTGRHVHNNIAIQAGEEFSANVGRDGIAAGRVPVSPDIPRHCKNVFGLNRENGNVRYEDLTNILGLRRMDSESSSDISDFVAIKQPAQEMETRASVNILSKIQKGDGVSRKAVQEPFGDQSSLASAVSPLRRYEASQSNGFSGSGILDDFLTGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIRKDISWAQLMKKTLGICNQPHTIKYQLPGEDLDALISVSSDEDLQNMKEEYHGLERHEGSQKLRIFLVSLGESEEISSTEVSAVQQSDPDYQYVVAVNGMGDPTRTNIGGQSLTNETSQFGTELNLAPVFPKIPNASSLLEIRDGINALNPDGILNDSLNLQRPLPIPPTPILVTGSNTGYIQLLGNNSCQGSIESNASFATAHLHPEYSNISTADCRYPQQAAATLSSDTCPYQHGDAGWPKKLNGHLDYNPGNEFVTPVYVNPSDGYSDEVFGGRSLQKERRVYSENPLSRLDDPIYQQGESYGITDSPHGMPHAFSDPQLHESEARSGYNSQNGFGQSFSLRLEKCQLSSMLPPKVSQVNLMENQHDSIVHHPQRQSKTPKVESAEPHKRQDLASSRYYDSLGMNDPVHMMDSILTEKKNLIAQTDLSGPCHVAKDIQENSVKLERMKLIEEKNPIFMDSKVHEAKSTVIDMGHVTELHVLDSFPANNFNAKINMQKNLELPSEGIVPASSGMMGLSLNNLVAKAPSDPDMSQRISDHKMYALAESLNGEQGVDFSLTRNFDLNAPTLNCEVGSCDKISQGDHMFKLSIHPDSLKAEQIHPSKNQMTAGFQENPTVSSASLYPAAFHDDLSPSPNMPLNDQDNSSNIMSFKIAPSYLDDFIISTGQMVNQIIPEHSASGMSKVEDKISEQSRRCNDANRVEPFVVVEDMTGVVRPYISEDVGSAVVSPSHMEAESIVPESEPADFNDDQTDKNEFLSDAMIAEMEASIYGLQIIRNADLEDLTELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIVAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPHVPERCDSEWRKLMEECWSPDPESRPSFTEITGRLRSMSMALQAKGNHQTYQLRPGGAS* 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2955 1290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1128 1140 IPR008271 GO:0004672|GO:0006468
Gso8g2955 1290 CDD STKc_MAP3K-like 1009 1266 - -
Gso8g2955 1290 PANTHER SERINE-THREONINE PROTEIN KINASE 105 1282 - -
Gso8g2955 1290 SMART PB1_new 204 291 IPR000270 GO:0005515
Gso8g2955 1290 SUPERFAMILY Protein kinase-like (PK-like) 991 1263 IPR011009 -
Gso8g2955 1290 Gene3D Phosphorylase Kinase; domain 1 996 1090 - -
Gso8g2955 1290 Gene3D - 208 291 - -
Gso8g2955 1290 ProSitePatterns Protein kinases ATP-binding region signature. 1009 1034 IPR017441 GO:0005524
Gso8g2955 1290 Pfam PB1 domain 206 289 IPR000270 GO:0005515
Gso8g2955 1290 Pfam Protein tyrosine and serine/threonine kinase 1006 1265 IPR001245 GO:0004672|GO:0006468
Gso8g2955 1290 PRINTS Tyrosine kinase catalytic domain signature 1085 1098 IPR001245 GO:0004672|GO:0006468
Gso8g2955 1290 PRINTS Tyrosine kinase catalytic domain signature 1122 1140 IPR001245 GO:0004672|GO:0006468
Gso8g2955 1290 PRINTS Tyrosine kinase catalytic domain signature 1193 1215 IPR001245 GO:0004672|GO:0006468
Gso8g2955 1290 PRINTS Tyrosine kinase catalytic domain signature 1237 1259 IPR001245 GO:0004672|GO:0006468
Gso8g2955 1290 MobiDBLite consensus disorder prediction 535 555 - -
Gso8g2955 1290 Coils Coil 904 924 - -
Gso8g2955 1290 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 105 1282 - -
Gso8g2955 1290 MobiDBLite consensus disorder prediction 1 21 - -
Gso8g2955 1290 SMART serkin_6 1003 1272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2955 1290 ProSiteProfiles Protein kinase domain profile. 1003 1282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2955 1290 Gene3D Transferase(Phosphotransferase) domain 1 1091 1285 - -
Gso8g2955 1290 SUPERFAMILY CAD & PB1 domains 206 293 - -
Gso8g2955 1290 CDD PB1_UP2 193 288 - -
Gso8g2955 1290 MobiDBLite consensus disorder prediction 593 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2955 Gso-Chr8 47163939 47172701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2955 186 442 MAP Kinase Kinase Kinase AT1G16270 44.944 5.51e-46 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso8g2955 PK_Tyr_Ser-Thr 2.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2955 - - gmx:100790135 2578.9