Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2942 ATGGATTTCCCAACGTCACTCTTTTTTCTACTCTTGCTTCTTTCTTTCCAATGTTCATCTTCCCTATCGTCACTGAACAAGGGGTCTTCCCTCTCAGTGGAGAAACACACACAAGACTCTATTGTCTCCCCAAATCAAATGTTCTGTGCTGGCTTCTTTCAAGTTGGTGAAAACGCCTTCTCCTTTGCCATATGGTTCAACGACCCTCACACTCACAACAACAACCACAACAACAGAAACGTTGTTTGGATTGCAAACCGCGAACAACCCGTTAATGGAAAGCTCTCAAAGCTTTCTCTCTTAAACAGTGGTAGCATCGTCTTGCTTGACGCAGATCAAATCACCACATGGTCATCAAACACAGCATCGAATGCCCCACTAGAGTTGAATCTCCAAGATGATGGTAATCTTGTGTTACGTGAGCTCCAAGGAACCATTTTGTGGCAAAGTTTTGATTCCCCAACCGATACTCTCCTTCCGGGTCAACCTCTTACTAGATACACACAACTTGTGTCTTCAAGAAGCAAGACTAACCATTCCTCTGGTTTCTATAAGCTGCTCTTTGATAATGACAACCTTCTTCGTCTTATTTACGATGGCCCTGATGTTTCGAGCTCGTATTGGCCTCCTCAATGGCTACTCAGTTGGGATGCTGGAAGGTTTAGTTTCAACAGCAGCAGAGTTGCAGTTTTCAATTCTCTTGGAATTTTCAATTCATCGGACAATTATGGTTTTTCCACAAATGATCATGGCAAGGTGATGCCAAGAAGATTAACACTAGATTCTGACGGAAATGTTCGCGTGTACAGCAGAAATGAGGCTTCAAAGAAATGGTACGTTTCATGGCAATTTATATTTGAAACTTGCACCGTTCATGGGGTTTGTGGTGTTAACAGCACTTGCAATTTTGATCCTAAAAGAGGAAGGATATGCTCGTGTCTACCAGGACACACAGTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCATGTTCAATCTTTCTTGCAACGGAAATGATTCTACCTTTTTGGAGTTGCAAGGTTTCGAGTTTTACGGATATGACAGTAATTATATACCTAACAGTACCTACATGAATTGTGTGAATTTGTGTTTGCAAGATTGTAACTGCAAAGGGTTCCAGTACAGATATGATGGGGAATATTCTACTTGCTTTACAAAGAGACAGTTGCTGAATGGGAGGCGTTCCACCAGATTTGAAGGAACGATTTACTTGAGACTTCCAAAGAACAATAACTTCTCTAAGGAAGAATCTGTGAGTGCATATGGTCATGTTTTTTCTGTGCAGCTTCACAAAGAGTATGTTAGAAAGCCAGAAAATCGTTTTGTGAGATTTTTTCTGTGGCTTGCTACTGCAGTTGGAGCTTTAGAAGTGGTTTGCTTTTTGATAATTTGGGTTTTTTTGATTAAGACGCGCCAAAAGTCTGGTGCAGATCAACAAGGCTACCATCAAGCAGAAATGGGGTTCAGAAAATATAGTTATTCTGAATTGAAGGAGGCGACAAAAGGGTTCAACCAAGAGATTTCAAGGGGTGCAGAAGGGATTGTGTACAAAGGCATTTTATCAGATCAAAGACATGTAGCAATTAAGAGACTCTATGAAGCCAAACAAGGAGAAGAGGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTCAATCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAGTATATGGAGAATGGTTCTTTGGCACAAAATCTCTCATCCAACACACTTGATTGGAGTAAGAGATATAGCATTGCTCTTGGAACGGCACGAGTTTTAGCATATCTGCATGAAGAATGCTTGGAGTGGATACTGCACTGTGATATAAAGCCTCAAAACATACTTCTTGATGCTAATTATCAGCCCAAGGTAGCAGATTTTGGGTTGTCCAAGCTACTAAACAGAAATAACCTCAACAACAATTTAAGGTTTTCAGTGATCAGAGGAACTCGAGGATATATGGCACCGGAGTGGGTATACAACTCACCAATCACCTCCAAAGTAGATGTTTACAGCTATGGAATTGTTCTATTGGAGATGATAACTGGGAAAAACCCAACAACTGGTGTCCATAGCAATGCTGGAGAAGAATCATATAATGGAAGGCTGGTAACATGGGTTAGAGAGAAAAGGGGTGATGCATCTTGGCTAGAGCACATCATTGATCCTGCAATTAAAACAAATTTCGATGAATGTAAGATGGACCTTTTGGCTAGAGTGGCTTTGGATTGTGTTGAGGTAAATAAAGATCGGAGACCCACCATGAGCCAAGTAGTAGAAATGCTTCAAAGCCATGATTGTTTAAGGTGTTGA 2379 0.4103 MDFPTSLFFLLLLLSFQCSSSLSSLNKGSSLSVEKHTQDSIVSPNQMFCAGFFQVGENAFSFAIWFNDPHTHNNNHNNRNVVWIANREQPVNGKLSKLSLLNSGSIVLLDADQITTWSSNTASNAPLELNLQDDGNLVLRELQGTILWQSFDSPTDTLLPGQPLTRYTQLVSSRSKTNHSSGFYKLLFDNDNLLRLIYDGPDVSSSYWPPQWLLSWDAGRFSFNSSRVAVFNSLGIFNSSDNYGFSTNDHGKVMPRRLTLDSDGNVRVYSRNEASKKWYVSWQFIFETCTVHGVCGVNSTCNFDPKRGRICSCLPGHTVKNHSDWSYGCEPMFNLSCNGNDSTFLELQGFEFYGYDSNYIPNSTYMNCVNLCLQDCNCKGFQYRYDGEYSTCFTKRQLLNGRRSTRFEGTIYLRLPKNNNFSKEESVSAYGHVFSVQLHKEYVRKPENRFVRFFLWLATAVGALEVVCFLIIWVFLIKTRQKSGADQQGYHQAEMGFRKYSYSELKEATKGFNQEISRGAEGIVYKGILSDQRHVAIKRLYEAKQGEEEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYSIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLNRNNLNNNLRFSVIRGTRGYMAPEWVYNSPITSKVDVYSYGIVLLEMITGKNPTTGVHSNAGEESYNGRLVTWVREKRGDASWLEHIIDPAIKTNFDECKMDLLARVALDCVEVNKDRRPTMSQVVEMLQSHDCLRC* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2942 792 SMART serkin_6 510 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2942 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Gso8g2942 792 Gene3D - 19 153 IPR036426 -
Gso8g2942 792 CDD B_lectin 40 154 IPR001480 -
Gso8g2942 792 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 4 789 - -
Gso8g2942 792 Pfam S-locus glycoprotein domain 239 320 IPR000858 GO:0048544
Gso8g2942 792 ProSiteProfiles PAN/Apple domain profile. 337 411 IPR003609 -
Gso8g2942 792 SUPERFAMILY Protein kinase-like (PK-like) 489 784 IPR011009 -
Gso8g2942 792 ProSiteProfiles Protein kinase domain profile. 510 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2942 792 Gene3D - 154 281 IPR036426 -
Gso8g2942 792 CDD PAN_AP_plant 333 416 - -
Gso8g2942 792 PIRSF SRK 2 791 IPR024171 GO:0004674
Gso8g2942 792 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 4 789 - -
Gso8g2942 792 SMART blect_4 32 154 IPR001480 -
Gso8g2942 792 Gene3D Phosphorylase Kinase; domain 1 475 584 - -
Gso8g2942 792 Pfam D-mannose binding lectin 81 167 IPR001480 -
Gso8g2942 792 CDD STKc_IRAK 516 785 - -
Gso8g2942 792 ProSiteProfiles Bulb-type lectin domain profile. 22 152 IPR001480 -
Gso8g2942 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 202 IPR036426 -
Gso8g2942 792 Gene3D Transferase(Phosphotransferase) domain 1 585 789 - -
Gso8g2942 792 Pfam Protein kinase domain 514 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2942 Gso-Chr8 47049548 47052670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2942 478 786 Trihelix Transcription Factor Family AT5G38560 41.176 2.44e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso8g2942 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2942 - - gmx:100784823 1567.36