Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2940 ATGGCTTTGTCAATCACACTCTTTCTTCTAGCATCGTTATTGTCTTTCCAAATTTCATCTTCATCATCATCATTGAGAAAGGGATCTTCCCTCTCAGTGGAAAATCCACAACACGTTCTTGTGTCACCAAATGGCATGTTCAGTGCTGGCTTCCTTGCCATTGGTGAGAACGCATATTCATTTGCAATATGGTTCACTGAGCCTCATTTCCACAGCCCCAACACCGTCACTTGGATGGCAAACCGTGACCAACCCGTGAATGGGAAGGGCTCGAAACTTTCCCTCACACACGCCGGCAACATAGTTTTGGTTGATGCTGGTTTTAACACTGCTTGGTCTTCAAACACCGCTTCATTAGCCCCAGCTGAGTTGCATCTCAAAGATGATGGCAATCTTGTGTTACGTGAGTTGCAAGGAACCATTCTGTGGCAAAGTTTTGATTTCCCAACTGATACTCTCGTTCCTGGCCAACCTCTTACCAGACACACGCTACTTGTGTCTGCAAGAAGCGAGAGTAACCATTCATCTGGTTTCTATAAGTTTTTCTTCAGCGATGATAACATTCTTCGTCTTGTCTACGATGGCCCTGATGTTTCCAGCAATTACTGGCCGAATCCCTGGCAAGTAAGTTGGCACATTGGAAGGACTCTATTCAATAGTAGTAGAATTGCAGCGTTGAATTCTCTGGGCCGATTCCGTTCATCAGATAATTTCACTTTTGTGACATTTGATTATGGGATGGTGCTGCAGAGAAGGTTGAAATTGGATTCTGATGGTAATCTCCGAGTTTATGGTCGAAAAAGTGCAGTAGAGAAATGGTATGTTTCATGGAAAGCAATTCGAAATGATTGTATAATTCATGGGGTTTGTGGACCCAACAGCACTTGTGGTTATGATCCAAAGAGTGGAAGAACATGCAAGTGTCTTCCAGGGTACAGATTGAGGAATCACAGTGATTGGTCATATGGGTGTGAACCCATGTTTGATCTCACTTGCAATTGGAACGAGACCACTTTCTTGGAGATGCGCGGTGTTGAGTTTTATGGCTATGATAATTATTATGTAGAAGTTAGTAACTATAGTGCTTGTGAGAATTTGTGCCTGCAAAATTGCACTTGTCAGGGATTTCAGCACTCCTATAGCCTAAGAGATGGCCTCTATTACAGGTGCTATACCAAAACAAAATTCCTCAACGGACAGCGTTTACCAAGATTCCCAGGAACAACATACTTGAGAATTCCTAAAAGTTATAGTTTATCTGTCAAAGAATCTGCTATTGACAGTGTAGATGATCATCATGTTTGTTCAGTTCAACTTCAAAGAGCTTATATCAAAACACTTGAAAGCCGTGTTGTGAGGGTTTTGCTGTGGTTTGCTGCCGCACTCGGAGCTTTTGAAATGGTTTGCATTTTTGTGGTTTGGTGCTTCCTCATTAGGACAGGCCAAAAGTCTAATGCAGATCAACAAGGCTACCATCTTGCAGCAACAGGATTCAGAAAGTTTAGTTACTCAGAGCTGAAAAAGGCTACAAAGGGGTTCAGTCAAGAGATTGGAAGAGGTGCAGGAGGGGTTGTGTACAAAGGCATTTTATCAGATCAAAGACACGCAGCAATTAAGAGACTCAATGAAGCTAAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTCAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGGTTGTTGGTGTATGAGTACATGGAGAATGGCTCTTTGGCACAAAATCTCTCATCCAACACACTTGGTTGGAGTAAGAGATACAACATTGTTCTGGGAACGGCAAGGGTTCTAGCATATCTGCATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATAAAGCCACAAAACATACTCCTAGATTCCAATTATCAGCCCAGGTTGGCAGACTTTGGTTTGTCTAAGCTCCTCAACAGAAATAACCCCAACAATCCAAGCATCTCAATGATCAGAGGCACAAGAGGATATATGGCACCTGAGTGGGTTTTTAACCTGCCTATCACATCCAAGGTAGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAAAAGCCCAACAACTAGTATCGATGACATTAATGGTGAAGAGACATATGATGGAAGGTTGGTGACATGGGTGAGAGAAAAAAGGAGCAACAGCAACACATCTTGGGTGGAGCAAATAATAGATCCTGTTATTGGACTAAATTATGATAAAAGTAAGATTGAAATTTTGATCACAGTGGCTTTAAAATGTGTACTGGAAGACAGAGATTCAAGGCCCAACATGAGCCAAGTAGTTGAGATGCTTCAATGTCACGGAAGTGATTCTCATTGA 2385 0.4214 MALSITLFLLASLLSFQISSSSSSLRKGSSLSVENPQHVLVSPNGMFSAGFLAIGENAYSFAIWFTEPHFHSPNTVTWMANRDQPVNGKGSKLSLTHAGNIVLVDAGFNTAWSSNTASLAPAELHLKDDGNLVLRELQGTILWQSFDFPTDTLVPGQPLTRHTLLVSARSESNHSSGFYKFFFSDDNILRLVYDGPDVSSNYWPNPWQVSWHIGRTLFNSSRIAALNSLGRFRSSDNFTFVTFDYGMVLQRRLKLDSDGNLRVYGRKSAVEKWYVSWKAIRNDCIIHGVCGPNSTCGYDPKSGRTCKCLPGYRLRNHSDWSYGCEPMFDLTCNWNETTFLEMRGVEFYGYDNYYVEVSNYSACENLCLQNCTCQGFQHSYSLRDGLYYRCYTKTKFLNGQRLPRFPGTTYLRIPKSYSLSVKESAIDSVDDHHVCSVQLQRAYIKTLESRVVRVLLWFAAALGAFEMVCIFVVWCFLIRTGQKSNADQQGYHLAATGFRKFSYSELKKATKGFSQEIGRGAGGVVYKGILSDQRHAAIKRLNEAKQGEGEFLAEVSIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLGWSKRYNIVLGTARVLAYLHEECLEWILHCDIKPQNILLDSNYQPRLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSPTTSIDDINGEETYDGRLVTWVREKRSNSNTSWVEQIIDPVIGLNYDKSKIEILITVALKCVLEDRDSRPNMSQVVEMLQCHGSDSH* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2940 794 CDD STKc_IRAK 517 787 - -
Gso8g2940 794 SMART serkin_6 511 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2940 794 CDD B_lectin 40 149 IPR001480 -
Gso8g2940 794 Gene3D Transferase(Phosphotransferase) domain 1 586 793 - -
Gso8g2940 794 Pfam D-mannose binding lectin 75 162 IPR001480 -
Gso8g2940 794 Gene3D Phosphorylase Kinase; domain 1 477 585 - -
Gso8g2940 794 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 204 IPR036426 -
Gso8g2940 794 SMART blect_4 30 149 IPR001480 -
Gso8g2940 794 ProSiteProfiles Bulb-type lectin domain profile. 16 147 IPR001480 -
Gso8g2940 794 Pfam S-locus glycoprotein domain 236 314 IPR000858 GO:0048544
Gso8g2940 794 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 3 793 - -
Gso8g2940 794 Gene3D - 17 147 IPR036426 -
Gso8g2940 794 PIRSF SRK 1 793 IPR024171 GO:0004674
Gso8g2940 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Gso8g2940 794 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 3 793 - -
Gso8g2940 794 SUPERFAMILY Protein kinase-like (PK-like) 488 787 IPR011009 -
Gso8g2940 794 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Gso8g2940 794 ProSiteProfiles EGF-like domain profile. 280 318 IPR000742 -
Gso8g2940 794 Pfam Protein kinase domain 514 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2940 794 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Gso8g2940 794 CDD PAN_AP_plant 328 414 - -
Gso8g2940 794 ProSiteProfiles Protein kinase domain profile. 511 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2940 Gso-Chr8 47034760 47037329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2940 501 786 Trihelix Transcription Factor Family AT5G38560 39.932 1.72e-62 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso8g2940 Pkinase 3.1e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2940 - - gmx:100783758 1596.64