Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2936 ATGAAGTCCACTATGGCTCAGAATCAGAGTAACTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTGATGAAAAGAAAATTACATGCCGCTGCAAAAGCTTTTGTCGCAGAAGGAAAAGTTTCCACGGATCCAGTAGCAATTGATGCGCCTGGAGGATTTCTCTATGAGTGGTGGTCTGTGTTTTGGGACATATTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCAGCTTACATTGAGACCCAGCAAACAAAAGCTAGAGAGCAACAACTTCAAATGCAGCAATTGCAACTTATGCAGCAACGCAGTGCACAGTTACAGAGAAGAGATCCTAATCATCCTGTCCTTGGTGGTTCCATAAATGCCATGAATTCTGAAGGAATGTTGGGTCAGCCACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGAACGAATGAAACACCCTCATTCAATGGATTCAGAGGCATCTCCTACTCTTATTGATCCCAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAGGTCAATTGGTTCATGGAAATTCAGGGAATATGTCCACTGCATTACAGCAAATTCCAGGGCGGACTCCTTTAACCACTGACATCAAAGGAGAAGTTAATTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAAACAAAATCTGGGCTAGGCAGTCCAGGAATAAATCAAGGAGTTACAAGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAAACCTAATTTCGGTGTACAAGCTTCTAAGCCCAATTTGACAACCCAGAACCAATTTGTTTTGGCATCACAACAGCAACAAGCCTTGGCACAGGCTCAGGCACAAAATAACCTTGGGAATTCTAATTATGGTGACATGGATCCTCGTAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTACCAGAAATGAAGGATCTATTTGCTCTCAAATGCAGTCAGATTCACCTAAGATGAAGATGGCTCAGTCACAACAATCATTATCTCATTCTCAACAGCAGGAGCAATTACAGCAGCAGAGTAACAGAAAAAGAAAATCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGCTCCGTCCCCTACTTCATCACCATCAACACATACACCTGGTGATGGATTAAATACAGCAAGCAGCTTACAGCATGTTAACAGTGTCCAAAAGAGCATGATGATGTATGGTACAGAGACAACAGGAGGCCTTGCATCATCGTCGAATTTGCTGGACGACATGGATCGATTTGGAGATGTTGATGCTTTAGATGATAATGTCGAATCCTTTCTATCAAATGATGGCGTAGATGGTGGAAATCTCTATGGAACAGTGAAACAAAGTCCGGCTGAGCAACTGAAAGAATCTTCAAAAGGTACCTTTGGTGAAGTTGGTTGCATAAGAACAAGGAGCAGCAAAGTTACTTGTTGTCACTTTTCTTCAGATGGAAAGTGGTTAGCCAGTGCTGGAGATGACATGAAGGTTGACATCTGGAACATGGACACTTTACAAATAGAGAGCACTCCTGCAGAACACAAATCAGTTATTACAGATGTCCGTTTTAGACCTAATTCATCTCAGTTGGCGACTGCTTCACGTGATAAGTCTGTGCGGTTATGGGACACAACCAATCCAAGCCGTTGTGTGCAAGAATATAGTGGGCATTCATCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAAGTTTTCTGCTTCTGTGATGGTGAAAATGAAATTCGGTATTGGAATATTAATTCAGCCACCTGCACCCGTGTAACTAAGGGAGCTAGTGCACAAGTGAGGTTTCAGCCTAGACTAGGGCGTTTCCTGGCAGCAGCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAATCTGACACACAAATTTACACCCTCCAGGGACATCCTGAACCGGTGAGCTATATTTGCTGGGATGGGAATGGTGATGCCTTGGCATCTGTGAGTCCTAATTTGGTGAAGGTTTGGAGTTTGACCTCAGGAGGAGAATGCATTCATGAGTTCAGCTCCACTGGGAGCCAATTGCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGAAGTTCGTCCTTAGAGTTATGGAACATGACCGATAACAAAAGCTTGACAGTTCCTGCACATGAAAATGTAATTTCTGCTTTGGCTCAGTCATCTGTCACTGGAATGGTTGCCTCTGCAAGTTATGACAACTATGTAAAGCTGTGGAAATAA 2343 0.4255 MKSTMAQNQSNWEADKMLDVYIYDYLMKRKLHAAAKAFVAEGKVSTDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAREQQLQMQQLQLMQQRSAQLQRRDPNHPVLGGSINAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSEASPTLIDPNRMALLKSAASHQGQLVHGNSGNMSTALQQIPGRTPLTTDIKGEVNLGATPKSLPMDTSVYRQAILQTKSGLGSPGINQGVTSLPLKGWPLASGIDQLKPNFGVQASKPNLTTQNQFVLASQQQQALAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLSAKDGQSTRNEGSICSQMQSDSPKMKMAQSQQSLSHSQQQEQLQQQSNRKRKSGAANSTGTGNTAAPSPTSSPSTHTPGDGLNTASSLQHVNSVQKSMMMYGTETTGGLASSSNLLDDMDRFGDVDALDDNVESFLSNDGVDGGNLYGTVKQSPAEQLKESSKGTFGEVGCIRTRSSKVTCCHFSSDGKWLASAGDDMKVDIWNMDTLQIESTPAEHKSVITDVRFRPNSSQLATASRDKSVRLWDTTNPSRCVQEYSGHSSAIMSLDFHPKKTEVFCFCDGENEIRYWNINSATCTRVTKGASAQVRFQPRLGRFLAAASDKGVSIFDVESDTQIYTLQGHPEPVSYICWDGNGDALASVSPNLVKVWSLTSGGECIHEFSSTGSQLHSCVFHPSYSTLLVIGGSSSLELWNMTDNKSLTVPAHENVISALAQSSVTGMVASASYDNYVKLWK* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 540 572 - -
Gso8g2936 780 Coils Coil 85 105 - -
Gso8g2936 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 498 539 IPR001680 GO:0005515
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 540 572 IPR001680 GO:0005515
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 583 625 IPR001680 GO:0005515
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Gso8g2936 780 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 780 - -
Gso8g2936 780 CDD WD40 502 780 - -
Gso8g2936 780 SMART WD40_4 533 572 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 619 655 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 658 696 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 491 530 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 576 616 IPR001680 GO:0005515
Gso8g2936 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Gso8g2936 780 SUPERFAMILY WD40 repeat-like 497 780 IPR036322 GO:0005515
Gso8g2936 780 MobiDBLite consensus disorder prediction 326 411 - -
Gso8g2936 780 Pfam LisH 16 41 IPR006594 GO:0005515
Gso8g2936 780 Gene3D - 495 631 IPR015943 GO:0005515
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 498 533 - -
Gso8g2936 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Gso8g2936 780 Pfam WD domain, G-beta repeat 578 616 IPR001680 GO:0005515
Gso8g2936 780 Pfam WD domain, G-beta repeat 541 572 IPR001680 GO:0005515
Gso8g2936 780 Pfam WD domain, G-beta repeat 503 530 IPR001680 GO:0005515
Gso8g2936 780 MobiDBLite consensus disorder prediction 304 411 - -
Gso8g2936 780 PRINTS G protein beta WD-40 repeat signature 517 531 IPR020472 -
Gso8g2936 780 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
Gso8g2936 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Gso8g2936 780 Gene3D - 632 780 IPR015943 GO:0005515
Gso8g2936 780 SMART Lish 14 46 IPR006594 GO:0005515
Gso8g2936 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 780 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2936 Gso-Chr8 47004241 47012737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2936 580 779 Miscellaneous Gene Families AT5G08390 24.390 1.08e-10 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso8g2936 WD40 0.044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2936 - - gmx:100786946 1467.6