Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2884 ATGGCAACTTCAGAGCAGCAAGTCCCTCCCAAAACTCCTGCAGCTGATATTGTTGGCAATGCTTTTGTTGATCAATACTACCATATGTTGCATGAAAGCCCTGAGCTGGTGCATAGGTTTTACCAAGATGTCAGTAAACTTGGCCGTCCTGAGCAGAATGGCATAATGGGTATTACAACCACAATGCTTGATATTAACAAGAAAATACTATCATTGGGTTATGGGGAACTCAGTGCAGAGATCGTATCAGTGGATGCACAAGAATCTTATGACGGGGGAGTCATTGTCTTGGTCACTGGGTTTATGATAGGAAAGGATGACATTAAGCAGAAATTTACTCAATGTTTTTTCCTTGCTCCTCAAGAGAAAGGCTACTTTGTTTTGAATGATGTTTTTAGATATGTTGATGAAAATGGAATCCAAGGGTCTGCTCATGATATTGGATCTCCTGCCCCTCCGGACACTGGTATTTCCAATCCTTCTGTGCTGGAGACACAAGTTTCCGAGCAAATATCTGTGACAGCTGAGGATGGTGATGAAGAGGTAGTCTACAATCCAGAAAATGGTCAAGCTGCAATTGAAGAAGAGGAAGCACCTGTACCTGAGGTTCTTGATGAAATTCCTGATGATTCTCAGATGGTAGCTGGATTGGCATCTCAAATTGAAGAAGTTCCAAAGAAGTCTTATGCTTATATTGTGAAGGTCATGAAAGAGGGTGCCATGCCGTCTTCCACTGTGACACCTGTTCCAGTGAAATCTGCCCACAAGAGTCAAGAACAGCAGGGTATTGCTGCACCTCCACCATCTAGCATATCAGAGACAAATGGTTCTGTTATAAATACTAATGAAGTTGGAAACATTCAAGAAGCTGAAGCCGAGGGCTATTCTATTTATGTGAAAGGTCTGCCACCAACTGCTACGCCTGCAGTCTTGGAGAATGAGTTTAAGAAGTTTGGACCTATTAAGAGTGGTGGCATCCAAGTTAGGAGCCAAAAGGGATTTTCCTATGGCTTTGTGGAGTTTGAAGTGGCAAGTGCTGCGCAAAGTGCACTTGAGGCTTCTCCAATTTCGATTAATGGCCGTCTCGTCGTTGTAGAAGAGAAGAGATCAACTAATCGAGGTAGAGGACGTTTCTCATCTGGCAGGGCTCCTAGCTTCAGGGGTGAAGGTGCAAGAGGGCGTGGAAATTACGGAAATGGCCGAAGCTATGGCCGTGGTGGTGACTTTAATGGCAGGGGAGAATATGGTTATAGGAATGGCAATCGGGGAGGGTTTTCAAGCCGTGGAGGTGATGGGTATCAGAGAAATGATCATATGGGTACCGGCGGTGGCCGCATGAATCGAGCAGGTGGGTCGGCTGTTAATCCAGCAGTCAAGACTGCCGGTGTTTGA 1392 0.4519 MATSEQQVPPKTPAADIVGNAFVDQYYHMLHESPELVHRFYQDVSKLGRPEQNGIMGITTTMLDINKKILSLGYGELSAEIVSVDAQESYDGGVIVLVTGFMIGKDDIKQKFTQCFFLAPQEKGYFVLNDVFRYVDENGIQGSAHDIGSPAPPDTGISNPSVLETQVSEQISVTAEDGDEEVVYNPENGQAAIEEEEAPVPEVLDEIPDDSQMVAGLASQIEEVPKKSYAYIVKVMKEGAMPSSTVTPVPVKSAHKSQEQQGIAAPPPSSISETNGSVINTNEVGNIQEAEAEGYSIYVKGLPPTATPAVLENEFKKFGPIKSGGIQVRSQKGFSYGFVEFEVASAAQSALEASPISINGRLVVVEEKRSTNRGRGRFSSGRAPSFRGEGARGRGNYGNGRSYGRGGDFNGRGEYGYRNGNRGGFSSRGGDGYQRNDHMGTGGGRMNRAGGSAVNPAVKTAGV* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2884 463 MobiDBLite consensus disorder prediction 373 463 - -
Gso8g2884 463 Pfam Nuclear transport factor 2 (NTF2) domain 18 134 IPR002075 -
Gso8g2884 463 Gene3D - 7 138 - -
Gso8g2884 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 295 370 IPR000504 GO:0003723
Gso8g2884 463 SMART rrm1_1 296 366 IPR000504 GO:0003723
Gso8g2884 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 297 355 IPR000504 GO:0003723
Gso8g2884 463 SUPERFAMILY RNA-binding domain, RBD 294 399 IPR035979 GO:0003676
Gso8g2884 463 PANTHER NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN-RELATED 9 405 - -
Gso8g2884 463 Gene3D - 248 384 IPR012677 -
Gso8g2884 463 ProSiteProfiles Nuclear transport factor 2 domain profile. 18 134 IPR018222 -
Gso8g2884 463 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 405 IPR039539 -
Gso8g2884 463 CDD NTF2 15 136 IPR018222 -
Gso8g2884 463 CDD RRM_SF 297 366 - -
Gso8g2884 463 SUPERFAMILY NTF2-like 15 135 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2884 Gso-Chr8 46485068 46489906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2884 296 367 Eukaryotic Initiation Factors Gene Family AT2G36660 38.356 1.28e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2884 K24983 - gmx:100816544 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1309 18 35457930 35463005 Gso8g2884 8 46485068 46489906 GST