Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso8g2876 | ATGGAAGAAGACTTCGACATCCCCGGCGGCGAGGAAATGGATCTCGGCGAAGACAAGGTCGGCGAGGAGCGGGAGATCGGCTCCCGCGGCCTCAAGAAGAAGCTCCTCAAAGAAGGTCAAGGCTGGGAAACCCCCGAAGTCGGCGACGAAGTCCAAGTTCATTACATGGGGACTTTGCTCGACGGAACTAAGTTTGATTCGAGCCGCGACAGGGATTCTCCCTTCAGCTTCACGCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCCGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACTATTCCTCCTAATGCTACTCTCCAATTTGATGTTGAGCTGCTGTCATGGACTAGTGTAAAGGACATATGCAAGGATGGCGGTATATTTAAGAAGATAGTTACTGAGGGGGACAAATGGGAGAACCCTAAGGATCCTGATGAAGTATTGGTTAAGTATGAAGTTCATCTAGAAAATGGAAAGCTTGTAGCAAAGTCTGATGGGGTGGAGTTCACAGTCAGAGAGGGTCATTATTGTCCTGCATTGTCAAAAGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGCTTTTGACAGTTAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGAACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACTGTTTCCGAAGTAACTGATGACAAGAAGGTCATAAAGAAGATCCTGAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTTAAAGTGAAACTAATTGGTAAGCTACAAGATGGTGCTGCCTTTTTGAAAAAGGGCCATGATGAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTTGTTGATGGACTTGATAGAGCTGTATTGACTATGAAGAAGGGTGAGGTTGCACTGTTGACCATTGCACCTGAGTATGCTTTTGGTTCATCAGAGTCCCAGCAGGAGTTGGCTGTAGTTCCTCCTAACTCAACTGTTTATTTTGAAGTTGAGCTAGTTTCATTTGAGAAAGAGAAGGAGTCCTGGGATTTGAACACTGAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCAAGTTGAAGTTAAAAGACTACAAGGAAGCAGAAAAATTGTGTACCAAGGTGTTAGACCTCGAGAGTACAAATGTTAAAGCCCTCTATAGAAGGGCCCAAGCATATATGCAGTTAACTGACTTGGATTTGGCTGAACTTGACATTAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGATGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGCGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGA | 1635 | 0.4343 | MEEDFDIPGGEEMDLGEDKVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQVHYMGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYEVHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASKRYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLESTNVKALYRRAQAYMQLTDLDLAELDIKKALEIDPNNRDVKLEYRTLKEKVKANNRKEAQFYGNMINKMTKIGS* | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso8g2876 | 544 | Pfam | Tetratricopeptide repeat | 474 | 507 | IPR001440 | GO:0005515 | |
| Gso8g2876 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 164 | 253 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 281 | 374 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 374 | 544 | - | - | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 260 | - | - | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 262 | 373 | - | - | |
| Gso8g2876 | 544 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 48 | 136 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | SUPERFAMILY | FKBP-like | 258 | 391 | - | - | |
| Gso8g2876 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 43 | 133 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 275 | 371 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 159 | 250 | IPR001179 | GO:0003755 | |
| Gso8g2876 | 544 | Gene3D | - | 140 | 253 | IPR046357 | GO:0003755 | |
| Gso8g2876 | 544 | Gene3D | Tetratricopeptide repeat domain | 377 | 534 | IPR011990 | GO:0005515 | |
| Gso8g2876 | 544 | SUPERFAMILY | FKBP-like | 140 | 256 | - | - | |
| Gso8g2876 | 544 | SUPERFAMILY | TPR-like | 380 | 538 | IPR011990 | GO:0005515 | |
| Gso8g2876 | 544 | Gene3D | - | 24 | 139 | IPR046357 | GO:0003755 | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 374 | 544 | - | - | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 262 | 373 | - | - | |
| Gso8g2876 | 544 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 260 | - | - | |
| Gso8g2876 | 544 | Gene3D | - | 254 | 375 | IPR046357 | GO:0003755 | |
| Gso8g2876 | 544 | ProSiteProfiles | TPR repeat profile. | 474 | 507 | IPR019734 | GO:0005515 | |
| Gso8g2876 | 544 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Gso8g2876 | 544 | SMART | tpr_5 | 391 | 424 | IPR019734 | GO:0005515 | |
| Gso8g2876 | 544 | SMART | tpr_5 | 440 | 473 | IPR019734 | GO:0005515 | |
| Gso8g2876 | 544 | SMART | tpr_5 | 474 | 507 | IPR019734 | GO:0005515 | |
| Gso8g2876 | 544 | SUPERFAMILY | FKBP-like | 22 | 149 | - | - | |
| Gso8g2876 | 544 | Coils | Coil | 507 | 527 | - | - | |
| Gso8g2876 | 544 | MobiDBLite | consensus disorder prediction | 12 | 32 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso8g2876 | Gso-Chr8 | 46416065 | 46421185 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso8g2876 | 19 | 542 | Calmodulin-binding Proteins | AT3G25230 | 81.298 | 0.0 | 867 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso8g2876 | K09571 | - | gmx:100812632 | 1056.2 |