Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2872 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCTCCACACCACCATCATCACCATCTTTGTCCACCACCCTCTTGGCAATCATCACTGTCTTCTGCCATGGATGTTCAAGTCACTGTTTTGAATTGTTCAACTGAGCAGAACCCGGATTGCTTCTACAACAACACCCCCACATGGGACAAGTCAACGGATCATCATGGTCTTCAGTTTGATTCAGCTCTGAGCTCAATGGTGTCCTCTCCTGCAGCCTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGAAACATTGGTGCTGGCTCTGATGAGATTGAGATCTCACCTCATTCTCAGCCTTTGGTTGGTGCATCTTCCTACATCAATTGCAATAACAACAGCACCAACACATCATGTTATAGTACCCCTTTGAGTTCTTCTCCAAAGGTGAACATGAACAAGATCCCCACAATGGTGAAGCACTTGGTGAAAGAGGGCATGCCCCTAAGTTTGGGGACATCAACGTCCTTGAATTCCACCGTGGCGGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGCTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGTGCCTCAACATTGCTGAATTGGCTCAGAGATCTTCTCCATTGGTGGAAAATGGGAAGAAGCAGCTCCCTAGAGTCTCAAGTAGTCCATCACTCAAAGTGCTTGGATCTCAAATGGGTACTCAGGAGAACAAGAATTCTCCATTGCAAGACCTAATGGAAGTGGCCAATTCTCAAGAGGAGTCCGCAATCTCTGAACAAACACCAAATGGAGACACTGGGGAGAAACCTTCCCCTTATGTGAATTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAAGAAACTTCAACCTCTACCAACCCCCCTATGGCTGCTGAAGCTAGCGATGACTCGAATGCAAAGCGCAGCAAGCCTAACGAAGGTGAGGGGAATGAAAATGGCCAAGTGAAGGCAGAGGAAGAGTCCAAAGGAGGTAATAATAGTAATGCAAATGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAACAAGGTCACGGGTAAAGCACTAATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACAGCCAATATTCCCAATAGATTCCTCGGCGCCACCCTTTTATGGGCAACAAACTCAGCCAAACCCAGCAATCCACAATAACATTCCTAATGGAACTATGACCCACAACTCAGTGGACCCATTAGATACTGGTATGTGCCAAAACCTTGGCATGCATTTACCACACCTAAATGGTTTTAATGAAGGTGGCTTTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGAACCCCTATGA 1761 0.4429 MENQFFLNAGVPPQLHFEPSPHHHHHHLCPPPSWQSSLSSAMDVQVTVLNCSTEQNPDCFYNNTPTWDKSTDHHGLQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGAGSDEIEISPHSQPLVGASSYINCNNNSTNTSCYSTPLSSSPKVNMNKIPTMVKHLVKEGMPLSLGTSTSLNSTVAEFSADPGFAERAAKLSCFGSRSFNGRTTQLCLNIAELAQRSSPLVENGKKQLPRVSSSPSLKVLGSQMGTQENKNSPLQDLMEVANSQEESAISEQTPNGDTGEKPSPYVNSRKRKGPSKGKAKETSTSTNPPMAAEASDDSNAKRSKPNEGEGNENGQVKAEEESKGGNNSNANDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAQPIFPIDSSAPPFYGQQTQPNPAIHNNIPNGTMTHNSVDPLDTGMCQNLGMHLPHLNGFNEGGFQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQEPL* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2872 586 Coils Coil 439 459 - -
Gso8g2872 586 CDD bHLH_AtBPE_like 382 467 - -
Gso8g2872 586 MobiDBLite consensus disorder prediction 331 353 - -
Gso8g2872 586 PANTHER BHLH TRANSCRIPTION FACTOR 2 583 - -
Gso8g2872 586 MobiDBLite consensus disorder prediction 566 586 - -
Gso8g2872 586 MobiDBLite consensus disorder prediction 234 383 - -
Gso8g2872 586 MobiDBLite consensus disorder prediction 241 296 - -
Gso8g2872 586 MobiDBLite consensus disorder prediction 354 370 - -
Gso8g2872 586 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 390 461 IPR036638 GO:0046983
Gso8g2872 586 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 442 IPR011598 GO:0046983
Gso8g2872 586 SMART finulus 398 448 IPR011598 GO:0046983
Gso8g2872 586 Pfam Helix-loop-helix DNA-binding domain 396 443 IPR011598 GO:0046983
Gso8g2872 586 MobiDBLite consensus disorder prediction 313 327 - -
Gso8g2872 586 Gene3D - 389 464 IPR036638 GO:0046983
Gso8g2872 586 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 583 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2872 Gso-Chr8 46383578 46386760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2872 1 552 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 40.853 5.31e-101 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso8g2872 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2872 - - gmx:100812081 1127.46