Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2855 ATGGCTTTAGTAGGTGAACAAAAGCATTCACTCATGGTGAAGAAAGGTCCATGTTCGCATTGCGGAGTTACTCATACTCCACTTTGGCATGATGGACCAACTGAGAAACCAGTGTTGTGTAGCGATTGTGGATCACAATACAAGTTAAAAGGAAATTTAGACAATTATTTTCCCAAGAATCCCGTTGTTCAGTCATTCCACAATAAGTTTACAAATGTAAATGGTGGAAAACATCTCAATGTTGATGTGGACCAACTTTCAAACTATGTTCCACCAACAACTGATGAAGACAACAATAAGTCAACCCCAAATGTCCATTGCATATCCGCGCAAGCTACTCCACTTTTGCGTAACGGACTAGTTGATAAATCGGTGTTGCACAAAGCTAGTGAATTATCCCCCCAAGAAACTCCAGCTTCAGCCATTAATGCCCCCAAGAAACTCCAGCTTCAGCCATTAATCCACAAGAACTTTAGAAATGTAAATGGTGGAAGCAGTCTCAATGTTGAGGATGAGGACCAACTTTCAAACCATATTACACCTGCAAGTGATGGAGACAACAATAAATCAACCCCAAATGTCCAACACATATCACCACAAGATTTTGGGAGCAAAATCCCTTCAAGGAAACGGTCACGGGTGGTATACCTGACACCATTGAAGGAGTGTATGGAGGAGCTTTGGAAATTACATAGAAATTATGGAAGGCATGCAGAAGAGCGTATATTGGAGGATAATGTGAACAACTTCATACCCGAAAATGAGATAGCAGGACTTGGAGCCATTCTTCTTAAGACGGATCATGATGTTGCAGCTTCTGCAGATACATGTGAATCATCCACAGATGATTGA 852 0.412 MALVGEQKHSLMVKKGPCSHCGVTHTPLWHDGPTEKPVLCSDCGSQYKLKGNLDNYFPKNPVVQSFHNKFTNVNGGKHLNVDVDQLSNYVPPTTDEDNNKSTPNVHCISAQATPLLRNGLVDKSVLHKASELSPQETPASAINAPKKLQLQPLIHKNFRNVNGGSSLNVEDEDQLSNHITPASDGDNNKSTPNVQHISPQDFGSKIPSRKRSRVVYLTPLKECMEELWKLHRNYGRHAEERILEDNVNNFIPENEIAGLGAILLKTDHDVAASADTCESSTDD* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2855 283 Gene3D - 12 69 IPR013088 GO:0006355|GO:0008270
Gso8g2855 283 SMART GATA_3 12 74 IPR000679 GO:0006355|GO:0043565
Gso8g2855 283 MobiDBLite consensus disorder prediction 164 202 - -
Gso8g2855 283 MobiDBLite consensus disorder prediction 164 206 - -
Gso8g2855 283 Pfam GATA zinc finger 18 52 IPR000679 GO:0006355|GO:0043565
Gso8g2855 283 PANTHER OSJNBB0038F03.10 PROTEIN 12 280 IPR044589 -
Gso8g2855 283 PANTHER OSJNBB0038F03.10 PROTEIN 12 280 - -
Gso8g2855 283 CDD ZnF_GATA 17 51 IPR000679 GO:0006355|GO:0043565
Gso8g2855 283 ProSiteProfiles GATA-type zinc finger domain profile. 18 66 IPR000679 GO:0006355|GO:0043565
Gso8g2855 283 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2855 Gso-Chr8 46221907 46226778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2855 12 58 C2C2-Gata Transcription Factor Family AT4G17570 65.957 7.20e-17 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso8g2855 GATA 6e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2855 - - gsj:114421311 590.112