Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2813 ATGTTCAAATACCTCCTTTTTTTTTTCTCTCACAAACCATTCACCAAAACCACAACCATGCATTTCAATCGCCTCTGCATAGTTTTACCACCAAATTCTGGTGAAATGGTAGTGCCACTTGAAAAGGGTGTCCTACAAGAAGAACCCTTTCAAACACCAAAGAAGCAACAAGTTGAGGCCAAGAAGCCTCATAGGGCTTGTGGTGGACAAGTTCTTGATTTGCTTCGTGATTCTTTTACCAAGTTATATGATTCAAGGTGGTGGAGAATTTGCCAACATGGAGAACACAAAGAGAAGAACAACTCTGGTGTGTTTTTTCATGACATGGATGGTGTGCAAGTTTCTGTCAACATTGGCAGGGACAACCCCAGAATTTTCAGCTATGCTGAGTTGTTCATAGGGTCCAATGGTTTCAGTGAAGACCAAGTTCTAGGGAGTGGAGGGTTTGGAAGAGTATACAAGGCTGTTTTGCCAAGTGATGGAACTGAGGTTGCTGTGAAGTGCTGTTTAGCAGAGAAAGGGAAGCAGTTTGAGAAGAGTTTTGCTGCTGAGTTAACAGCTGTGGCAGATCTTCGCCACAAGAATCTTGTGAGGCTGAGGGGTTGGTGTGTGAATGAGGATCAGTTGCATCTTGTTTATGACTACATGCCTAACCGAAGCCTCGACCGCGTACTATTTCGAAGGCATGAGAATTCGAAGGCTGAGCCTCTTCAATGGGGACAAAGAGGGAAGATTTTGAAAGGTTTGGCAGCAGCATTGTACTATCTCCATGAGCAGCTAGAGACTCAAATCATTCATAGGGATGTTAAGACCAGCAATGTGATGCTTGATTCGCATTACAATGCTCGGTTGGGCGATTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTATGAGTACAAGTATAACAATAGGAAAACAATCGCAACCAAAAGTGGCCACTTCAGGTTGGGAGAAACATCAAGAATTGGTGGCACAATTGGGTATCTTCCACCTGAAAGCTTGCAGAAACCAAGCAATGCTACTTCCAAATCTGATGTCTTTAGCTTTGGGATTGTTGTGCTAGAGGTGGTGTCTGGAAGGAGAGCAATTGACCTAACACACCCTGATGAACAAATCATTTTGCTTGATTGGATTAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAAGCGGCTGATTCTCGGTTACTGGATGGATCATACAAGCTTTCAGAGATGCAGCATTTCATTCACATAGGCCTCCTATGCACACTCCATGACCCTCAATTGAGGCCAAGCATGAAATGGGTAGTGGAAGCACTTTCTGACATTTCTTTCAAATTACCATCACTCCCTTCTTTCCTCTCCCACCCTTTATACATCTCTCTGTCTTCTCCTTCTAATACTAATAATAGTCCTAGCAGCACAAGTGTCACTAGCTCCTCCACCACAGATAATGCTAGCAGCATAATCACCAACCATACTTCATCAAACTATGTCACAGCTGCAGGTGAAACTGTGTATGTCACTGCTGAGTACAAAAACAGTGAAATCATCTCTTCTAAGAGCATGAGCCACCACCAGCAACCATTTCCTGTGGTTGAAACTCCAAGGGAAATATCATTCAAGGAGATTGTTTCTGCTACAGATAACTTTTCTGATTCGAGAAGGGTGGCTGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAGTGCCATGTTTTGGTGAAACGCCTTGGGCTGAAAACGTGTCCTGCATTGCGTGATAGATTCTCCAACGAACTTCGGAATCTTGGAAGGCTTCGCCATAGGAATTTGGTTCAGCTTCGAGGATGGTGCACCGAGCAAGGAGAGATGCTTGTCTTATATGATTACTCAGCAAGTAGAATTCTCAGCCAACGGCTTCAGCATCATAGCAATGGAAGTAGAAGGGGGAGTTCTGTCCTCCAATGGCACCACAGGTATAACATAGTGAAAGCACTGGCCTCTGCAGTTCTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATTCTTGAACCAGATATGAATCCAAGACTCACCTCTTTTGCTCTAGCCGAATTTTTGTCAAGGAATGAGAATGGTCATCATGTAGTCATTGATACTAAAAAGTCGGTTCGTGGGATATTTGGCTACATGGCACCGGAATATGTTGAATCAGGTGAAGCAACCACTGAGGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAGTTGTTAGCGGACAGATGGCAGTGGATTTCAGGCAGCCAGAGGTGCTTTTGGTTAAGAAGGTTCATGAATTTGAGATGAGAAAAAGGCCATTGAAGGAATTAGCTGATATAAGACTCAATGGAGAGTACAATGACCAAGAATTGATGAGATTGGTAAGGTTAGGAATAGCTTGCACCAGATGTAACCCGCAGTTAAGACCAAGCATGAGACAAATTGTAAGCATCCTTGATGGCAATGACAAATTACTTATCCAGAATAACAAGGAGAGCAGAGAAGAATGGAGGGAAAGAAATGATTGTTCTTTGTCAATGATTAAGAGAATTCAAGCTCTAGGAATACAGTAA 2598 0.4338 MFKYLLFFFSHKPFTKTTTMHFNRLCIVLPPNSGEMVVPLEKGVLQEEPFQTPKKQQVEAKKPHRACGGQVLDLLRDSFTKLYDSRWWRICQHGEHKEKNNSGVFFHDMDGVQVSVNIGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGRVYKAVLPSDGTEVAVKCCLAEKGKQFEKSFAAELTAVADLRHKNLVRLRGWCVNEDQLHLVYDYMPNRSLDRVLFRRHENSKAEPLQWGQRGKILKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKYNNRKTIATKSGHFRLGETSRIGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTHPDEQIILLDWIRRLSDEGKLLEAADSRLLDGSYKLSEMQHFIHIGLLCTLHDPQLRPSMKWVVEALSDISFKLPSLPSFLSHPLYISLSSPSNTNNSPSSTSVTSSSTTDNASSIITNHTSSNYVTAAGETVYVTAEYKNSEIISSKSMSHHQQPFPVVETPREISFKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGLKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVLYDYSASRILSQRLQHHSNGSRRGSSVLQWHHRYNIVKALASAVLYLHEEWDEQVIHRNITSSAVILEPDMNPRLTSFALAEFLSRNENGHHVVIDTKKSVRGIFGYMAPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLVRLGIACTRCNPQLRPSMRQIVSILDGNDKLLIQNNKESREEWRERNDCSLSMIKRIQALGIQ* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2813 865 SMART serkin_6 138 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2813 865 ProSiteProfiles Protein kinase domain profile. 138 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2813 865 MobiDBLite consensus disorder prediction 460 480 - -
Gso8g2813 865 Gene3D Transferase(Phosphotransferase) domain 1 216 441 - -
Gso8g2813 865 Gene3D Transferase(Phosphotransferase) domain 1 628 853 - -
Gso8g2813 865 Pfam Protein tyrosine and serine/threonine kinase 552 827 IPR001245 GO:0004672|GO:0006468
Gso8g2813 865 Gene3D Phosphorylase Kinase; domain 1 110 215 - -
Gso8g2813 865 Pfam Protein kinase domain 139 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2813 865 SUPERFAMILY Protein kinase-like (PK-like) 122 476 IPR011009 -
Gso8g2813 865 Gene3D Phosphorylase Kinase; domain 1 504 622 - -
Gso8g2813 865 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 20 864 - -
Gso8g2813 865 ProSiteProfiles Protein kinase domain profile. 546 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso8g2813 865 PANTHER - 20 864 - -
Gso8g2813 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Gso8g2813 865 CDD STKc_IRAK 557 829 - -
Gso8g2813 865 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Gso8g2813 865 SUPERFAMILY Protein kinase-like (PK-like) 520 827 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2813 Gso-Chr8 45874567 45877362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2813 531 829 Receptor kinase-like Gene Family AT3G59740 32.673 1.23e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gso8g2813 Pkinase 9.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2813 - - gmx:100796108 1677.92