Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2810 ATGCTCATTTTCGCTCGTTGCCTTCTCGGTGGATCCTGGTGGACTCTAGAGGATAAAAAAGAGATCTTGCGTTGTGGGGTGTTTCTGATTATTGTTCGAAGAAACAGGAAAGAAAAGGGTCTTTTTTTTGTGTTGGTTTTGTTGTTTGAAATGAATGAGTATACTGGACCAGCTCGTAGGACGCGAAGCAAAGGAGTCGAGGTTCGGGGTGGTTTGATCAGGAGTCGGAAGAGGAGGAGAGTGGTGGATTACGATGATGATGAATTGGTTTTCGTGAAAGAACTCAAGGGTGGAGGTGAAGGTGCGAGTGCGAAGATTGAAAAATCTATGGAAAGGGGTTTTGAGTTTCTGGGAGAGAGTGAGGATGATGGTCCTTTTGAGGTTGTTGAAATTGATGAAGATGATGATGAAGCTGAGGAAGAGGTGTATGGGGAATGTGAGCAGAAGAAGAAGAGGGTTGAGGTTAAGGTGGAAGAGAAGGATGAAGGCCCTGAAGTGTTGTGTTACGTGGCTGCTGAGAAAGTTGCAAGCTTTGGTGGTGGTGACGATGATGAGTGCGGTTCTAGACCCGAGAACCCGGTTGTTATGCTGTGTGTTTCAGATGATGGGGGTGGTCAGAGCGAGGAGGACCACGGCAGGGATCGTAGTAGCGTGTCTTCTGATGATGGATTTGGTTCGAGTTCGTCCTCTTCGAGCGAGGACGATGATTCAAGTGATGATGATTTTAAGGTTGGTGTTGAGGATGAAAGGGCTGATGATGAGGAAGACTATTCAAGCATTGAGGAGGAGAGTGAGAGTGATGATGATTCCTCTTGTGATGATGAGAGGGGAGAGTTGTACAAGAAGTTTGTGAAGGAGAGGGTCAGAAATCTGGTGAGTAAATCCGGGAGCAGTGGAGTTAGTAGAAGAAAAGGTAAAGGGAATCGGAGAATGCAGGTGGAGGAGGAGGAGATGGTTGAGAAATGGAATGGTGCTGATTGTGCTAGTGTGACATCTAGCAAATCGTGTACTTGCAAGGATGAAACAAGGCAGGCAGAAGTGATAGATGATGCAGCAGAGAGAGGAGAAAGTGTCAATGCTGCTGCTGATGAGCTCTTTGCTAATCAGGTTCCGAGACCGAGTCTGCCGTTAGCTGCTAGGGAGACAGTCCCTTTGAATGGCAACTGCCAGAAGAAAAAACCTGTGGAAGCAGAATCTGCGAAGGAGATTGATATGCTATGGAATGAATTGGATATTGCTCTTCAAGAAACTGAGGCAGGAGATTCAACTATGTTGAAGAAGAAGCGTTTGCCATCAGGTGTGAGAAGTGTTTCTCCTTTGCCAAAAAGGCAAGAGAAGATGGGAGATTCAGCTAAAGTTGTTATGAAGGAGGATGATGGAAATGGTGACAAAAATGGGCTCCATGAAGTCCTAAGGATGTCAAATAGATCAAAGAACATAGGTTTTAAATTCTTCACCGAATGCTTTTGGGGAAAGCCTGATTCTGACAAAGATGATCCAATGGAGTTGGAAGAAAAGGATGGTGTTGTTGTTCAGGGTCAGACTCAGCCATTAGCTTGTGGGGTGGGAATCCCTTTGACATGGGACTTTCTGAAGAAGAACCCTGTTGAAAAATCAGAGGCTGAGAAAGAGTTAGACATGTTGTGGGCTGAAATGGAGATGTTGCTTCGAGCTGGAGAAATTGGGATCCAGGTTGATGAAGCAAGAGCAAAGGAAGAAAATCCAGCCTTGCAGTGCAAGCATGACACTATTTTTAATGAGGAGATTGGGGTATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATCAAATACATCATGCCACCATTTGTGGATTCCAAAAGATCCGGTAGAGAGGCATTTCCTGGTGCATGGAAAACCTCACAGTTTGATGGAGCTACGTTTGATGATTGTGGTGATGACTCAGGGGCAGCTTGGTCTCACAATGAAGGAACAGTTTGGGATATTATTTCTGACATTAAAAAAGGCTTGTTTCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAGTTTGGCAGGAACCACCAACCTTGCTGAGTTGAAGAGGGTTGACCCGGGTACTGAGGGTGGGTGCATTATTTCACATGCTCCTGGAACAGGAAAGACAAAGTTGACCATGGTGTTTCTTCAGACATATTTGCAACTGTTTCCCAAGTGTCTACCTGTTATCATTGCTCCTGCCAACATACTTCTTACTTGGGAAGATGAGTTGAGGAAGTGGAACATAGGAATTCCATTCCATAACCTGAACAATGCTGAATTGTCAGGAAAAGAAAATGTAATTAATGAATTTGGTTATCAAGAGCTGAATAAGGATGCCATAAGAATGCTGAAGCTGTGTTCATGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATTTATATGAGAAGCTAGCTGGGGGAAAGTCTGAAGATGATGGGGAGAAAGAGAAGAAAAACAGAAAGATTCGGAAAGAGAAGAAACGTGCAAGCATTGAAACTGCGATGGGAAAGGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGGCACACACCGAGGAATCAGCGTAGCTGTATTTGGAAGGTTCTTTCAGAAAGTAGAAGTCAGAAGCGAATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTTCAATATTTTTTGCTTAATGAAACCATCCTTTTCTGACAACATACCGCAAGAACTGAAGAAGTTTTGCCAAAGTAAACTGATACAGGAAAGGAAAGCTTCAAAAGATGTGAGTTGGGAGTCCATTAATTCTGGAAATCCGGCTGACGAGAAAATAAAACAGCTGAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCTTGGGTTACAAGATTGTGTACTGATTTTGAAGCCCGAAATCTTGCAGCAAAAAATTCTGGATAGCATTGAATGTTCTCAAAATGGACTCAATTTTGAACACAAATTGGCCTTGGTCTCTGTACACCCATCCCTTTTCCTCAACTGCTCTCTCTCAAAAAAGGAAGAATCTGTTATTGACATGGATCAGTTAAAGAAGTGTAGATTGGACTCTTATGAAGGGGTCAAAACAAAATTTTTGATGGAATTTGTGAATTTATGTGATGCAGTTGATGAGAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTGATCTTAATTAAGGACCAACTCGAGTCAGCCTTCAATTGGTCTGAGGGCAGAGAAGTGTTGTTTATGCATGGCAGGGTTGACCAAAAGCAAAAGCAGTCCCTAATTCATAGTTTCAATGATGCCAATAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGAATTAACTTAGTTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGACAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAAGGTTGTTTACACTTATCATCTTCTTGCACAAGGCACCCCTGAATGCACCAAATATTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGAAATGCTGAAAGTGATAAGCTCAAGAGAAGTGGAGTAATTGAGGATAAAGTTCTTGATGCCATGGTTCAGCATGAAAAACTCAAGGATATATTTGGTGAATGTCTGGTTCAACCAAAGGAGGGAGATCAGGAGACTTTGTGCCCCTGA 3741 0.4282 MLIFARCLLGGSWWTLEDKKEILRCGVFLIIVRRNRKEKGLFFVLVLLFEMNEYTGPARRTRSKGVEVRGGLIRSRKRRRVVDYDDDELVFVKELKGGGEGASAKIEKSMERGFEFLGESEDDGPFEVVEIDEDDDEAEEEVYGECEQKKKRVEVKVEEKDEGPEVLCYVAAEKVASFGGGDDDECGSRPENPVVMLCVSDDGGGQSEEDHGRDRSSVSSDDGFGSSSSSSSEDDDSSDDDFKVGVEDERADDEEDYSSIEEESESDDDSSCDDERGELYKKFVKERVRNLVSKSGSSGVSRRKGKGNRRMQVEEEEMVEKWNGADCASVTSSKSCTCKDETRQAEVIDDAAERGESVNAAADELFANQVPRPSLPLAARETVPLNGNCQKKKPVEAESAKEIDMLWNELDIALQETEAGDSTMLKKKRLPSGVRSVSPLPKRQEKMGDSAKVVMKEDDGNGDKNGLHEVLRMSNRSKNIGFKFFTECFWGKPDSDKDDPMELEEKDGVVVQGQTQPLACGVGIPLTWDFLKKNPVEKSEAEKELDMLWAEMEMLLRAGEIGIQVDEARAKEENPALQCKHDTIFNEEIGVYCRWCGWIATEIKYIMPPFVDSKRSGREAFPGAWKTSQFDGATFDDCGDDSGAAWSHNEGTVWDIISDIKKGLFPHQQEGFEFIWTSLAGTTNLAELKRVDPGTEGGCIISHAPGTGKTKLTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKENVINEFGYQELNKDAIRMLKLCSWYKEKSILLISYNLYEKLAGGKSEDDGEKEKKNRKIRKEKKRASIETAMGKVLRDYPGLLVLDEGHTPRNQRSCIWKVLSESRSQKRILLSGTPFQNNFLELFNIFCLMKPSFSDNIPQELKKFCQSKLIQERKASKDVSWESINSGNPADEKIKQLKLLMNPFVHVHKGSILQKNLLGLQDCVLILKPEILQQKILDSIECSQNGLNFEHKLALVSVHPSLFLNCSLSKKEESVIDMDQLKKCRLDSYEGVKTKFLMEFVNLCDAVDEKVLVFSQFIDTLILIKDQLESAFNWSEGREVLFMHGRVDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDKLKRSGVIEDKVLDAMVQHEKLKDIFGECLVQPKEGDQETLCP* 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2810 1246 SMART ultradead3 660 909 IPR014001 -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 293 319 - -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 233 273 - -
Gso8g2810 1246 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 55 1242 IPR044567 GO:0080188
Gso8g2810 1246 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 698 901 IPR014001 -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 204 218 - -
Gso8g2810 1246 Pfam Helicase conserved C-terminal domain 1053 1160 IPR001650 -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 179 277 - -
Gso8g2810 1246 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1048 1206 IPR001650 -
Gso8g2810 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 922 IPR027417 -
Gso8g2810 1246 CDD SF2_C_SNF 1017 1171 - -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 423 449 - -
Gso8g2810 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1207 IPR027417 -
Gso8g2810 1246 SMART helicmild6 1075 1160 IPR001650 -
Gso8g2810 1246 Pfam SNF2-related domain 683 984 IPR000330 GO:0005524|GO:0140658
Gso8g2810 1246 Gene3D - 645 953 IPR038718 -
Gso8g2810 1246 Gene3D - 970 1239 IPR027417 -
Gso8g2810 1246 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 55 1242 - -
Gso8g2810 1246 MobiDBLite consensus disorder prediction 810 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2810 Gso-Chr8 45834413 45841847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2810 1058 1206 RAD5 or RAD16-like Gene Family AT5G43530 35.570 1.37e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso8g2810 SNF2_N 9e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2810 K10875 - gmx:100807262 2322.74