Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2809 ATGTATGTTGCTGACAGGACGCGTAGCAAGCGGGGAAGGGTGGTTGGAAGTGGTTTAATAATGGGTGAGAAGAAAAAAAGGGTGCATGACTACCATGAAGAGATTGTCTTGGAAGATAATGAAGAAGGTGCAAGTGTGAAAGTTGAACCTGGGCCTGGTGCTTCTTCATCGTCATCATCATCTGGTGCTCGTGCTTTGAAGCGGGAAAGGGTATCTGAACATGGTTTTCAGAATTTGGGAGGGCGTGCAGATGACCCTATTAAAATCAGTGACAGTGAAGATGATGATGGTGAAGAGGGGTTGAGTGATTTTGAGAAGAAGAGGTTTCTGGGTGAAGAGGAAAAGGAAAGGAAGAGCGAGGAGGGTAAAGGTTGTGGCGGTGAGAAGGAGCATGCTGTGGCTGAGAGTGGTTCAAATGATGAGGGATATGATTCTCTTTTGTCTAGTTTATCGGAGAGTGAGAATGCTGTGACCAGTGATGAAGATTTTCAGGTTGATGATGATGGGAATGAGAGTCATTACTACTCGAGCAGTGATTCTTCTTCATATGATGATGGTGAGAGGGGTGGATACAGAAAGATGGTGAAAGAGAGGGTGAGAAAGGTGGAGAGTGAAACTGAAAGTAGTGTAGTTTACAAAAGAAAAGGTGAAAGGAAAGATATTGAGCTTGTAGAGGAGGAAGAGCCACGGATTGGTGCTGATTGTTCTAGTGCAACCTCTAATAAATCTGAGATGTATAAGGAGGAACCAGGGAATGCAGCACAGAAGCATAAAGTAAAGAGGGTGGAGAGTGTCAATGCTGATGCCTTTGGTGATCACTCGGAAAGTTCAGATCGCTCTATGCAGTCTGAAGAAGCTGAAGCATTGGAACATATGAAAAAAAGAGATAGAGACCATCAAAATGTGTCATTGGAGAATAAGACAGGAGATTCAGCTGTGGTCAAGATGAGTGAGAAAAATAATAATGTTGATGCCGGCGAGGTAGGAGAGCATAAATATGAGTTTAACAGCAATAAACGTGAGAAGCCAGAGAAGGTAAGGGTGGTGGATGACGAAACTGGCGACAAACATGAGCTGTATGAAGTCCTAAGGATGCCATCTAGAACAAAAAACCGATGCCTCAAGTTTTTTACTGAATGCTTTTGGGGCGAGAATGATTCTGTTAAAGATGATTCAAATCAGTTGGAAGAAAAGGATGATGATATTGATCAGGGTCAGACTCAGCCACTAGCTTCTAGGGAGACAGTCCTTGTGAATTGGAACTTTACGAAGAAAGAACTCATTGAAAAATCAGAGTTTGAGAAGGAGTTAGATAACTTGTGGGGTGAAATGGATATGCTCCTTCGAGTTGAAGAAATTGGGTCTCAGATTGATAAAGTAGGGGAAAATGAAGAAAATTCAGCCTCACAGTGCAAGCACGACACTATTTTCAATGAGGAGATTGGGATATACTGCAGATGGTGTGGTTGGATTCACACTGAAATCAAATATATCACGCCACCATTTGTGGATAATGAAAGATCTGGTCGAGAGGCGTTATCTGATGGAGGGAAAACTTCACAATTTGATGGGGTTCTGTTTAATGATTCTGTTGATGACTCGGAGGCAGTTTGGTCTCACAATGAAGGCACGGTCTGGGATCTTATTCCTGACATAAAAGAAAGCTTGTTTCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAGTTTGGCAGGAACCATTGACCTTGCCGAGTTGAAGAGGGTTGACATGCATACTGAGGGTGGGTGCATTATTTCACATGCTCCTGGAACAGGAAAGACAAAGTTGACCATGGTGTTTCTTCAGACATATTTGCAACTGTTTCCCAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACTTGGGAAGATGAGTTAAGGAAGTGGAACCTAGGAATTCCCTTTCATAACTTGAACAATGCTGAATTATCCGGAAACGAGCAAGACATTAATGAAGTTGACTTGTCTGGCAATCAAAGGCAGAATAAGGATGCCATCCGAATGGTGAAGTTGTGTTCGTGGTACAAGGAAAAGAGCATTCTATTAATCAGCTACCATTTGTATGAGAGGCTAGCCAGGGGGTTGTGCGAAGATGATGGGAAAAAAGAGAAGAAAAATAAAAAGATGAAAAAAGGGAAGAAACGTGCAAGGACTAGGGAGTACATTGAAACTGCAATGGGAAAGGTTTTGCGTGACTATCCTGGTTTGCTAATTCTTGATGAAGGGCACACACCACGGAATCAGCGTAGCTATATTTGGAAGGTTCTCTCAGAAAGTAGATCTCAAAAGCGAGTCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCTGGAACTCTACAATATTTTGTGCTTAATGAAGCCATCCTTTCCTGACAGCATACCGCAAGAACTCAAGAAGTTTTGCCAAAGTAGACTAAGGAAGGAAAGGAAAGCTTCAAAATATGCGAGTTATGAACCCATTTATTCTGGAAATTCAGCTGATGAGAAAATAAAGCAGCTGAAATCGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCCGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACAGGTTGCAGCAAGAAACTTTGGACATCATTGATTCTTCTCAAAACATACTGAACTTTGAACATAAGTTGGCGTTGGTATCAGTCCATCCATCTCTTTTTCTAAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTCTTGACAAGGATCAGTTGGAAAAGCTTAGATTGAACCCTTATGGAGGAGTTAAAACCAATTTTTTGTTGGAGCTTGTGAGACTATGTGATGCAGTTAACGAAAAAGTCCTTGTTTTCAGCCAATTTATTGATACCTTATGCTTAATCAAGGACCAACTCGAGTCAGCCTTTCATTGGTCTGTGGGGACTGAAGTGTTGTATATGTATGGCAAGCTAGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATACAAATAGCAAAGCAAAGGTGTTGCTTGCATCTATAAAAGCATCTTCTGAAGGAATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGACAAGCTATTTGTCGAGCATATAGACTCGGACAAAAAAAAGTTGTTTACACTTATCATCTTCTTGCACAGGACACCCCTGAATGCATCAAATTTTGTAAACAAGCAGAAAAGGACCGGTTATCTGAACTGGTTTTCTCCAATAAAAATGCTAAAAGTGATAAGCTTAACAGTTGTGGAGCAGCGCTTGAGGATGCAGTTCTTGATATCATGGTTCAGCACGAAAAACTTAAGGATATGTTTGGTGAACTTCTGGTTCAACCAAAGGAGAGAGATTTTGGAGACTTTGGGCCCCTGATGCTTTGA 3450 0.4148 MYVADRTRSKRGRVVGSGLIMGEKKKRVHDYHEEIVLEDNEEGASVKVEPGPGASSSSSSSGARALKRERVSEHGFQNLGGRADDPIKISDSEDDDGEEGLSDFEKKRFLGEEEKERKSEEGKGCGGEKEHAVAESGSNDEGYDSLLSSLSESENAVTSDEDFQVDDDGNESHYYSSSDSSSYDDGERGGYRKMVKERVRKVESETESSVVYKRKGERKDIELVEEEEPRIGADCSSATSNKSEMYKEEPGNAAQKHKVKRVESVNADAFGDHSESSDRSMQSEEAEALEHMKKRDRDHQNVSLENKTGDSAVVKMSEKNNNVDAGEVGEHKYEFNSNKREKPEKVRVVDDETGDKHELYEVLRMPSRTKNRCLKFFTECFWGENDSVKDDSNQLEEKDDDIDQGQTQPLASRETVLVNWNFTKKELIEKSEFEKELDNLWGEMDMLLRVEEIGSQIDKVGENEENSASQCKHDTIFNEEIGIYCRWCGWIHTEIKYITPPFVDNERSGREALSDGGKTSQFDGVLFNDSVDDSEAVWSHNEGTVWDLIPDIKESLFPHQQEGFEFIWTSLAGTIDLAELKRVDMHTEGGCIISHAPGTGKTKLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNLGIPFHNLNNAELSGNEQDINEVDLSGNQRQNKDAIRMVKLCSWYKEKSILLISYHLYERLARGLCEDDGKKEKKNKKMKKGKKRARTREYIETAMGKVLRDYPGLLILDEGHTPRNQRSYIWKVLSESRSQKRVLLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLRKERKASKYASYEPIYSGNSADEKIKQLKSLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDRLQQETLDIIDSSQNILNFEHKLALVSVHPSLFLNCSLSKKEESVLDKDQLEKLRLNPYGGVKTNFLLELVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFHWSVGTEVLYMYGKLDQKQKQSLIHSFNDTNSKAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQDTPECIKFCKQAEKDRLSELVFSNKNAKSDKLNSCGAALEDAVLDIMVQHEKLKDMFGELLVQPKERDFGDFGPLML* 1150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2809 1149 MobiDBLite consensus disorder prediction 249 302 - -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 101 137 - -
Gso8g2809 1149 Gene3D - 862 1133 IPR027417 -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 388 410 - -
Gso8g2809 1149 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1141 - -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 37 302 - -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 141 158 - -
Gso8g2809 1149 SMART helicmild6 974 1059 IPR001650 -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 185 232 - -
Gso8g2809 1149 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1141 IPR044567 GO:0080188
Gso8g2809 1149 SMART ultradead3 552 808 IPR014001 -
Gso8g2809 1149 MobiDBLite consensus disorder prediction 388 404 - -
Gso8g2809 1149 Pfam Helicase conserved C-terminal domain 944 1059 IPR001650 -
Gso8g2809 1149 Gene3D - 534 853 IPR038718 -
Gso8g2809 1149 Pfam SNF2-related domain 574 884 IPR000330 GO:0005524|GO:0140658
Gso8g2809 1149 MobiDBLite consensus disorder prediction 51 65 - -
Gso8g2809 1149 CDD SF2_C_SNF 941 1070 - -
Gso8g2809 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1103 IPR027417 -
Gso8g2809 1149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 582 800 IPR014001 -
Gso8g2809 1149 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 947 1100 IPR001650 -
Gso8g2809 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 824 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2809 Gso-Chr8 45828213 45832517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso8g2809 957 1104 RAD5 or RAD16-like Gene Family AT5G43530 38.514 1.82e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso8g2809 SNF2_N 9.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2809 K10875 - gmx:100806733 2165.96